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Os03g0198900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DNA glycosylase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.47 (0.0212) R2 : 0.586
β1 : -1.91 (0.0776) R2dD : 0.568 R2D : 0.438
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.5 (0.0452) R2dN8 : 0.148 R2N8 : 0.0177
σ : 0.398
deviance : 72.41
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
57.8 0.357 9.32 -0.904 0.361 -0.456 0.396 6.67 -0.45 6.27 31.27 1263 -- --
59.58 0.359 9.45 -1.98 0.391 0.294 0.333 -- -0.457 5.88 32.65 1298 -- --
58.14 0.355 9.32 -0.88 0.365 -0.475 -- 6.83 -0.452 5.98 31.4 1263 -- --
59.46 0.359 9.45 -1.99 0.39 0.525 -- -- -0.462 5.92 34.98 1710 -- --
64.93 0.375 9.3 -0.688 -- -0.583 -- 7.96 -0.441 -- 31.46 1281 -- --
63.83 0.375 9.46 -1.92 0.395 -- 0.407 -- -0.507 5.86 -- -- -- --
64.2 0.375 9.46 -1.92 0.398 -- -- -- -0.509 5.63 -- -- -- --
66.88 0.381 9.45 -1.99 -- 0.568 -- -- -0.445 -- 34.94 1226 -- --
160.84 0.591 9.41 -- 0.367 0.199 -- -- -0.29 5.9 35.51 4100 -- --
72.41 0.398 9.47 -1.91 -- -- -- -- -0.5 -- -- -- -- --
161.22 0.594 9.41 -- 0.367 -- -- -- -0.296 5.86 -- -- -- --
167.82 0.603 9.42 -- -- 0.203 -- -- -0.281 -- 35.49 4439 -- --
168.22 0.605 9.42 -- -- -- -- -- -0.288 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 54.01 atmosphere 995.0 270 > th dose dependent rect. 7 18
7 54.53 atmosphere 995.0 10 > th dose dependent rect. 9 18
9 54.66 temperature 10.0 270 > th dose dependent rect. 1 7
11 54.80 temperature 30.0 270 < th dose dependent rect. 7 7
15 54.86 atmosphere 1000.0 270 > th dose independent rect. 7 18
22 55.09 atmosphere 1000.0 270 > th dose independent rect. 20 16
27 55.16 radiation 30.0 270 < th dose independent rect. 1 7
33 55.21 temperature 10.0 270 > th dose dependent rect. 2 17
46 55.44 temperature 20.0 270 > th dose independent rect. 3 16
55 55.50 humidity 70.0 270 > th dose independent rect. 1 7
56 55.53 atmosphere 995.0 10 > th dose dependent rect. 11 16
59 55.55 atmosphere 1015.0 90 < th dose dependent rect. 3 19
60 55.56 radiation 40.0 270 < th dose dependent rect. 1 7
65 55.60 atmosphere 1000.0 270 > th dose independent rect. 19 7
76 55.67 precipitation 0.1 270 < th dose independent rect. 1 7
77 55.67 precipitation 0.1 270 < th dose dependent rect. 1 7
79 55.69 atmosphere 995.0 270 > th dose dependent rect. 20 18
92 55.75 atmosphere 1015.0 270 < th dose dependent rect. 11 9
96 55.76 temperature 30.0 270 < th dose dependent rect. 9 1
98 55.78 wind 7.0 270 < th dose independent rect. 1 6
100 55.78 atmosphere 1015.0 270 < th dose dependent rect. 1 19
112 55.82 temperature 10.0 270 > th dose independent rect. 1 7
114 55.82 temperature 30.0 270 < th dose independent rect. 1 7
115 55.82 humidity 50.0 270 > th dose independent rect. 1 7
117 55.82 atmosphere 995.0 270 > th dose independent rect. 1 7
118 55.82 atmosphere 1015.0 270 < th dose independent rect. 1 7
119 55.82 temperature 10.0 270 > th dose independent rect. 8 17
120 55.82 precipitation 0.1 270 < th dose independent rect. 8 17
122 55.82 precipitation 0.1 270 < th dose dependent rect. 8 17
132 55.83 atmosphere 1000.0 10 > th dose independent rect. 9 18
136 55.84 humidity 50.0 270 > th dose independent rect. 2 17
146 55.87 atmosphere 1010.0 270 < th dose independent rect. 2 17
161 55.94 humidity 50.0 270 > th dose dependent rect. 1 6
162 55.94 temperature 30.0 10 < th dose dependent rect. 9 7
171 55.98 temperature 20.0 30 > th dose independent rect. 4 16
177 56.00 radiation 40.0 90 < th dose independent rect. 3 6
202 56.09 temperature 15.0 10 > th dose independent rect. 9 18
204 56.09 wind 9.0 270 < th dose dependent rect. 1 6
210 56.11 atmosphere 1000.0 270 > th dose independent rect. 5 22
218 56.13 precipitation 0.1 90 < th dose independent rect. 3 6
220 56.13 wind 9.0 270 < th dose independent rect. 8 17
226 56.13 precipitation 0.1 90 < th dose dependent rect. 3 6
230 56.14 temperature 15.0 270 > th dose independent rect. 19 7
246 56.17 humidity 50.0 90 > th dose dependent rect. 3 6
248 56.18 humidity 60.0 90 > th dose independent rect. 3 6
260 56.22 wind 9.0 90 < th dose dependent rect. 3 6
278 56.28 radiation 40.0 90 < th dose dependent rect. 3 6
285 56.30 temperature 30.0 270 < th dose independent rect. 20 16
287 56.30 humidity 50.0 270 > th dose independent rect. 14 16
288 56.31 wind 9.0 90 < th dose independent rect. 3 6
289 56.31 temperature 10.0 90 > th dose independent rect. 3 6
292 56.31 atmosphere 995.0 90 > th dose independent rect. 3 6
293 56.31 atmosphere 1015.0 90 < th dose independent rect. 3 6
314 56.34 temperature 20.0 720 < th dose dependent rect. 5 1
347 56.42 atmosphere 995.0 270 > th dose dependent rect. 7 7
350 56.42 atmosphere 1015.0 270 < th dose dependent rect. 14 17
355 56.44 temperature 25.0 270 < th dose independent rect. 8 6
373 56.45 wind 9.0 10 < th dose dependent rect. 3 6
379 56.47 precipitation 0.1 10 < th dose independent rect. 3 6
380 56.47 precipitation 0.1 10 < th dose dependent rect. 3 6
390 56.49 humidity 60.0 90 > th dose independent rect. 3 8
391 56.49 precipitation 0.1 10 < th dose independent rect. 9 18
394 56.49 precipitation 0.1 10 < th dose dependent rect. 9 18
441 56.56 radiation 40.0 10 < th dose independent rect. 3 8
444 56.56 atmosphere 1015.0 90 < th dose dependent rect. 16 16
448 56.57 temperature 20.0 720 < th dose dependent rect. 4 3
449 56.57 temperature 20.0 720 < th dose dependent rect. 2 6
451 56.58 wind 7.0 10 < th dose independent rect. 3 6
469 56.61 radiation 40.0 90 < th dose independent rect. 3 8
478 56.62 temperature 10.0 10 > th dose dependent rect. 3 19
488 56.64 atmosphere 1015.0 270 < th dose independent rect. 12 9
489 56.64 atmosphere 1000.0 10 > th dose independent rect. 22 16
505 56.66 humidity 50.0 270 > th dose independent rect. 12 8
524 56.69 precipitation 0.1 270 < th dose independent rect. 3 2
526 56.69 precipitation 0.1 270 < th dose dependent rect. 3 2
545 56.71 wind 1.0 270 > th dose independent rect. 12 8
546 56.71 precipitation 0.1 270 < th dose independent rect. 2 17
549 56.71 atmosphere 995.0 90 > th dose dependent rect. 20 7
551 56.71 precipitation 0.1 270 < th dose dependent rect. 2 17
561 56.73 temperature 10.0 270 > th dose independent rect. 12 8
563 56.73 temperature 10.0 270 > th dose independent rect. 20 16
596 56.77 temperature 10.0 10 > th dose independent rect. 3 6
598 56.77 temperature 30.0 10 < th dose independent rect. 3 6
599 56.77 humidity 50.0 10 > th dose independent rect. 3 6
601 56.77 atmosphere 995.0 10 > th dose independent rect. 3 6
602 56.77 atmosphere 1015.0 10 < th dose independent rect. 3 6
603 56.77 wind 9.0 270 < th dose independent rect. 12 8
605 56.77 temperature 25.0 720 < th dose dependent rect. 23 11
608 56.78 humidity 80.0 270 > th dose independent rect. 3 2
623 56.79 temperature 10.0 10 > th dose dependent rect. 3 6
634 56.80 precipitation 0.1 270 < th dose independent rect. 12 8
640 56.80 humidity 50.0 270 > th dose independent rect. 20 16
643 56.80 precipitation 0.1 270 < th dose dependent rect. 12 8
650 56.81 radiation 40.0 10 < th dose independent rect. 3 6
730 56.87 humidity 50.0 270 > th dose independent rect. 7 18
732 56.87 atmosphere 1015.0 90 < th dose dependent rect. 3 6
744 56.88 radiation 1.0 270 < th dose dependent rect. 3 2
751 56.89 temperature 30.0 1440 < th dose independent rect. 18 15
752 56.89 atmosphere 1000.0 10 > th dose independent rect. 11 16
759 56.90 precipitation 0.1 270 < th dose independent rect. 20 16
766 56.90 precipitation 0.1 270 < th dose dependent rect. 20 16
767 56.91 wind 9.0 270 < th dose independent rect. 3 2
768 56.91 temperature 10.0 270 > th dose independent rect. 3 2
770 56.91 temperature 30.0 270 < th dose independent rect. 3 2
771 56.91 humidity 50.0 270 > th dose independent rect. 3 2
774 56.91 atmosphere 995.0 270 > th dose independent rect. 3 2
775 56.91 atmosphere 1010.0 270 < th dose independent rect. 3 2
777 56.91 radiation 20.0 270 < th dose independent rect. 3 2
785 56.91 temperature 10.0 270 > th dose independent rect. 5 22
797 56.92 radiation 1.0 270 < th dose independent rect. 3 2
805 56.92 atmosphere 1015.0 270 < th dose dependent rect. 1 6
825 56.93 humidity 50.0 270 > th dose dependent rect. 3 2
832 56.94 wind 1.0 270 > th dose independent rect. 8 17
840 56.95 precipitation 0.1 270 < th dose independent rect. 19 7
845 56.95 precipitation 0.1 270 < th dose dependent rect. 19 7
877 56.98 temperature 30.0 270 < th dose independent rect. 19 7
878 56.98 humidity 50.0 270 > th dose independent rect. 19 7
880 56.98 radiation 1.0 270 < th dose independent rect. 19 7
886 56.98 wind 9.0 270 < th dose independent rect. 20 16
887 56.98 wind 9.0 270 < th dose independent rect. 2 17
892 56.98 precipitation 0.1 270 < th dose independent rect. 5 22
896 56.98 radiation 1.0 270 < th dose dependent rect. 19 7
910 56.98 precipitation 0.1 270 < th dose dependent rect. 5 22
912 56.99 temperature 10.0 270 > th dose independent rect. 6 8
913 56.99 atmosphere 995.0 270 > th dose independent rect. 6 8
914 56.99 atmosphere 1015.0 270 < th dose independent rect. 6 8
915 56.99 temperature 10.0 270 > th dose independent rect. 14 16
929 56.99 atmosphere 1015.0 270 < th dose dependent rect. 11 21
933 57.00 wind 9.0 270 < th dose independent rect. 19 7
955 57.02 wind 9.0 270 < th dose independent rect. 14 16
984 57.04 temperature 25.0 270 < th dose independent rect. 9 2