BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0198900 Os03g0198900|AK063273
(417 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G75090.1 | chr1:28187647-28189612 REVERSE LENGTH=330 275 5e-74
AT5G57970.1 | chr5:23467316-23468910 FORWARD LENGTH=348 252 3e-67
AT1G80850.1 | chr1:30385607-30387272 REVERSE LENGTH=328 243 1e-64
AT1G15970.1 | chr1:5486544-5488494 REVERSE LENGTH=353 233 2e-61
AT5G44680.1 | chr5:18024461-18025893 REVERSE LENGTH=354 206 2e-53
AT3G12710.1 | chr3:4040572-4041828 REVERSE LENGTH=313 195 4e-50
AT1G13635.1 | chr1:4674248-4675784 FORWARD LENGTH=312 195 5e-50
>AT1G75090.1 | chr1:28187647-28189612 REVERSE LENGTH=330
Length = 329
Score = 275 bits (702), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 121/208 (58%), Positives = 167/208 (80%), Gaps = 2/208 (0%)
Query: 199 RCSWITVNSEPLYVAFHDEEWGVPVHDDQKLFELLTLSQALAEITWPIILNKRDEFREMF 258
RC WIT NS+P+YV FHDEEWGVPV DD+KLFELL SQALAE +WP IL +RD+FR++F
Sbjct: 120 RCHWITPNSDPIYVLFHDEEWGVPVRDDKKLFELLVFSQALAEFSWPSILRRRDDFRKLF 179
Query: 259 DGFNYASVSEFTDKKINLLSKSNGNMLLSEQKIRAVVTNAKQMHKVIQDFGSFSNYCWSF 318
+ F+ +++++FT+K++ L + NG ++LSEQK+RA+V NAK + KV Q+FGSFSNYCW F
Sbjct: 180 EEFDPSAIAQFTEKRLMSL-RVNGCLILSEQKLRAIVENAKSVLKVKQEFGSFSNYCWRF 238
Query: 319 VKHKPVKSNFRYARQVPIKTPKSEAISKGLMRRGFQCVGPTTIYSFMQVSGIVNDHLSCC 378
V HKP+++ +RY RQVP+K+PK+E ISK +M+RGF+CVGPT +YSF+Q SGIVNDHL+ C
Sbjct: 239 VNHKPLRNGYRYGRQVPVKSPKAEYISKDMMQRGFRCVGPTVMYSFLQASGIVNDHLTAC 298
Query: 379 FRFQDCR-DIKRNLRAEPGLIERRLNSP 405
FR+Q+C + +R ++ + L+SP
Sbjct: 299 FRYQECNVETERETKSHETETKLDLHSP 326
>AT5G57970.1 | chr5:23467316-23468910 FORWARD LENGTH=348
Length = 347
Score = 252 bits (643), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 113/188 (60%), Positives = 144/188 (76%), Gaps = 1/188 (0%)
Query: 197 KTRCSWITVNSEPLYVAFHDEEWGVPVHDDQKLFELLTLSQALAEITWPIILNKRDEFRE 256
K RC+W+T NS+P Y+ FHDEEWGVPVHDD++LFELL LS ALAE TWP IL+KR FRE
Sbjct: 153 KKRCTWVTPNSDPCYIVFHDEEWGVPVHDDKRLFELLVLSGALAEHTWPTILSKRQAFRE 212
Query: 257 MFDGFNYASVSEFTDKKINLLSKSNGNMLLSEQKIRAVVTNAKQMHKVIQDFGSFSNYCW 316
+F F+ ++ + +KKI + S + LLS+ K+RAV+ NA+Q+ KVI+++GSF Y W
Sbjct: 213 VFADFDPNAIVKINEKKI-IGPGSPASTLLSDLKLRAVIENARQILKVIEEYGSFDKYIW 271
Query: 317 SFVKHKPVKSNFRYARQVPIKTPKSEAISKGLMRRGFQCVGPTTIYSFMQVSGIVNDHLS 376
SFVK+K + S FRY RQVP KTPK+E ISK L+RRGF+ VGPT +YSFMQ +GI NDHL+
Sbjct: 272 SFVKNKAIVSKFRYQRQVPAKTPKAEVISKDLVRRGFRSVGPTVVYSFMQAAGITNDHLT 331
Query: 377 CCFRFQDC 384
CFRF C
Sbjct: 332 SCFRFHHC 339
>AT1G80850.1 | chr1:30385607-30387272 REVERSE LENGTH=328
Length = 327
Score = 243 bits (621), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 111/189 (58%), Positives = 142/189 (75%), Gaps = 1/189 (0%)
Query: 196 GKTRCSWITVNSEPLYVAFHDEEWGVPVHDDQKLFELLTLSQALAEITWPIILNKRDEFR 255
G+ RC+WIT S+ Y+AFHDEEWGVPVHDD++LFELL+LS ALAE++W IL+KR FR
Sbjct: 132 GRKRCAWITPKSDQCYIAFHDEEWGVPVHDDKRLFELLSLSGALAELSWKDILSKRQLFR 191
Query: 256 EMFDGFNYASVSEFTDKKINLLSKSNGNMLLSEQKIRAVVTNAKQMHKVIQDFGSFSNYC 315
E+F F+ ++SE T+KKI + LLSEQK+R+++ NA Q+ K+I FGSF Y
Sbjct: 192 EVFMDFDPIAISELTNKKITS-PEIAATTLLSEQKLRSILENANQVCKIIGAFGSFDKYI 250
Query: 316 WSFVKHKPVKSNFRYARQVPIKTPKSEAISKGLMRRGFQCVGPTTIYSFMQVSGIVNDHL 375
W+FV KP +S FRY RQVP+KT K+E ISK L+RRGF+ V PT IYSFMQ +G+ NDHL
Sbjct: 251 WNFVNQKPTQSQFRYPRQVPVKTSKAELISKDLVRRGFRSVSPTVIYSFMQTAGLTNDHL 310
Query: 376 SCCFRFQDC 384
+CCFR DC
Sbjct: 311 TCCFRHHDC 319
>AT1G15970.1 | chr1:5486544-5488494 REVERSE LENGTH=353
Length = 352
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 106/189 (56%), Positives = 139/189 (73%), Gaps = 1/189 (0%)
Query: 196 GKTRCSWITVNSEPLYVAFHDEEWGVPVHDDQKLFELLTLSQALAEITWPIILNKRDEFR 255
G+ RC+WIT ++P YVAFHDEEWGVPVHDD+KLFELL LS ALAE++W IL++R R
Sbjct: 143 GRKRCAWITPKADPCYVAFHDEEWGVPVHDDKKLFELLCLSGALAELSWTDILSRRHILR 202
Query: 256 EMFDGFNYASVSEFTDKKINLLSKSNGNMLLSEQKIRAVVTNAKQMHKVIQDFGSFSNYC 315
E+F F+ +V+E DKK+ + LLSE KIR+++ N++ + K+I + GS Y
Sbjct: 203 EVFMDFDPVAVAELNDKKLTA-PGTAAISLLSEVKIRSILDNSRHVRKIIAECGSLKKYM 261
Query: 316 WSFVKHKPVKSNFRYARQVPIKTPKSEAISKGLMRRGFQCVGPTTIYSFMQVSGIVNDHL 375
W+FV +KP +S FRY RQVP+KT K+E ISK L+RRGF+ V PT IYSFMQ +G+ NDHL
Sbjct: 262 WNFVNNKPTQSQFRYQRQVPVKTSKAEFISKDLVRRGFRSVSPTVIYSFMQAAGLTNDHL 321
Query: 376 SCCFRFQDC 384
CFR+QDC
Sbjct: 322 IGCFRYQDC 330
>AT5G44680.1 | chr5:18024461-18025893 REVERSE LENGTH=354
Length = 353
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 129/188 (68%), Gaps = 3/188 (1%)
Query: 197 KTRCSWITVNSEPLYVAFHDEEWGVPVHDDQKLFELLTLSQALAEITWPIILNKRDEFRE 256
K RCS+IT +S+P+YVA+HD+EWGVPVHDD LFELL L+ A W +L +R+ FRE
Sbjct: 163 KKRCSFITTSSDPIYVAYHDKEWGVPVHDDNLLFELLVLTGAQVGSDWTSVLKRRNTFRE 222
Query: 257 MFDGFNYASVSEFTDKKINLLSKSNGNMLLSEQKIRAVVTNAKQMHKVIQDFGSFSNYCW 316
F GF V++F +KKI + G ++ ++ AVV NAKQ+ KV +D GSF+ Y W
Sbjct: 223 AFSGFEAELVADFNEKKIQSIVNDYG---INLSQVLAVVDNAKQILKVKRDLGSFNKYIW 279
Query: 317 SFVKHKPVKSNFRYARQVPIKTPKSEAISKGLMRRGFQCVGPTTIYSFMQVSGIVNDHLS 376
F+KHKPV + + +++P+KT KSE ISK ++RRGF+ VGPT I+S MQ +G+ NDHL
Sbjct: 280 GFMKHKPVTTKYTSCQKIPVKTSKSETISKDMVRRGFRFVGPTVIHSLMQAAGLTNDHLI 339
Query: 377 CCFRFQDC 384
C R +C
Sbjct: 340 TCPRHLEC 347
>AT3G12710.1 | chr3:4040572-4041828 REVERSE LENGTH=313
Length = 312
Score = 195 bits (495), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 89/192 (46%), Positives = 127/192 (66%), Gaps = 3/192 (1%)
Query: 199 RCSWITVNSEPLYVAFHDEEWGVPVHDDQKLFELLTLSQALAEITWPIILNKRDEFREMF 258
RCS++T S+P+YVA+HDEEWGVPVHDD+ LFELLTLS A W L KR ++R+ F
Sbjct: 123 RCSFLTPTSDPIYVAYHDEEWGVPVHDDKTLFELLTLSGAQVGSDWTSTLRKRHDYRKAF 182
Query: 259 DGFNYASVSEFTDKKINLLSKSNGNMLLSEQKIRAVVTNAKQMHKVIQDFGSFSNYCWSF 318
F V++ T+K++N +S + K+R VV NAK++ ++ + F S Y W F
Sbjct: 183 MEFEAEVVAKLTEKEMNAISI---EYKIEMSKVRGVVENAKKIVEIKKAFVSLEKYLWGF 239
Query: 319 VKHKPVKSNFRYARQVPIKTPKSEAISKGLMRRGFQCVGPTTIYSFMQVSGIVNDHLSCC 378
V HKP+ +N++ ++P+KT KSE+ISK ++RRGF+ VGPT ++SFMQ +G+ NDHL C
Sbjct: 240 VNHKPISTNYKLGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLITC 299
Query: 379 FRFQDCRDIKRN 390
R C + N
Sbjct: 300 CRHAPCTLLATN 311
>AT1G13635.1 | chr1:4674248-4675784 FORWARD LENGTH=312
Length = 311
Score = 195 bits (495), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 85/186 (45%), Positives = 131/186 (70%), Gaps = 1/186 (0%)
Query: 199 RCSWITVNSEPLYVAFHDEEWGVPVHDDQKLFELLTLSQALAEITWPIILNKRDEFREMF 258
RC+WIT S+ +YV FHD++WGVPV+DD LFE L +S L + W IL +++ FRE F
Sbjct: 116 RCNWITKKSDEVYVMFHDQQWGVPVYDDNLLFEFLAMSGMLMDYNWTEILKRKEHFREAF 175
Query: 259 DGFNYASVSEFTDKKINLLSKSNGNMLLSEQKIRAVVTNAKQMHKVIQDFGSFSNYCWSF 318
F+ V++ +K+I ++ SN ++L E ++R +V NAK + KV+ +FGSFS++ W F
Sbjct: 176 CEFDPNRVAKMGEKEIAEIA-SNKAIMLQESRVRCIVDNAKCITKVVNEFGSFSSFVWGF 234
Query: 319 VKHKPVKSNFRYARQVPIKTPKSEAISKGLMRRGFQCVGPTTIYSFMQVSGIVNDHLSCC 378
+ +KP+ + F+Y+R VP+++PK+E ISK +++RGF+ VGP ++SFMQ +G+ DHL C
Sbjct: 235 MDYKPIINKFKYSRNVPLRSPKAEIISKDMIKRGFRFVGPVIVHSFMQAAGLTIDHLVDC 294
Query: 379 FRFQDC 384
FR DC
Sbjct: 295 FRHGDC 300
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.132 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,050,047
Number of extensions: 291777
Number of successful extensions: 776
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 769
Number of HSP's successfully gapped: 7
Length of query: 417
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 316
Effective length of database: 8,337,553
Effective search space: 2634666748
Effective search space used: 2634666748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)