BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0198900 Os03g0198900|AK063273
(417 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0198900 DNA glycosylase family protein 730 0.0
Os09g0420300 DNA glycosylase family protein 239 3e-63
Os06g0649800 DNA glycosylase family protein 220 2e-57
Os01g0799500 DNA glycosylase family protein 207 9e-54
Os08g0489300 DNA glycosylase family protein 201 1e-51
>Os03g0198900 DNA glycosylase family protein
Length = 417
Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/417 (86%), Positives = 361/417 (86%)
Query: 1 MPLRVATLVRNGTRRWTQGTKSPYPSSXXXXXXXXXXXXXXXXXXXXXXXXXXVNPNDAS 60
MPLRVATLVRNGTRRWTQGTKSPYPSS VNPNDAS
Sbjct: 1 MPLRVATLVRNGTRRWTQGTKSPYPSSCRGRCTRRRPRRPARRDRPCRRGDDAVNPNDAS 60
Query: 61 APARAFGICRQGQFRPLTDVSKXXXXXXXXXXXXXXHCNCRAQRLASEMPGLRPESPAIP 120
APARAFGICRQGQFRPLTDVSK HCNCRAQRLASEMPGLRPESPAIP
Sbjct: 61 APARAFGICRQGQFRPLTDVSKNPYYEPIIPAPAPNHCNCRAQRLASEMPGLRPESPAIP 120
Query: 121 SPELRRVRTSFTGASSWVATTAMGKVVRSANAPVEPKAKVEDVEKQRRRGKGGCNGTXXX 180
SPELRRVRTSFTGASSWVATTAMGKVVRSANAPVEPKAKVEDVEKQRRRGKGGCNGT
Sbjct: 121 SPELRRVRTSFTGASSWVATTAMGKVVRSANAPVEPKAKVEDVEKQRRRGKGGCNGTVSS 180
Query: 181 XXXXXXXXXXXXXELGKTRCSWITVNSEPLYVAFHDEEWGVPVHDDQKLFELLTLSQALA 240
ELGKTRCSWITVNSEPLYVAFHDEEWGVPVHDDQKLFELLTLSQALA
Sbjct: 181 ARCRSPPPSPVSPELGKTRCSWITVNSEPLYVAFHDEEWGVPVHDDQKLFELLTLSQALA 240
Query: 241 EITWPIILNKRDEFREMFDGFNYASVSEFTDKKINLLSKSNGNMLLSEQKIRAVVTNAKQ 300
EITWPIILNKRDEFREMFDGFNYASVSEFTDKKINLLSKSNGNMLLSEQKIRAVVTNAKQ
Sbjct: 241 EITWPIILNKRDEFREMFDGFNYASVSEFTDKKINLLSKSNGNMLLSEQKIRAVVTNAKQ 300
Query: 301 MHKVIQDFGSFSNYCWSFVKHKPVKSNFRYARQVPIKTPKSEAISKGLMRRGFQCVGPTT 360
MHKVIQDFGSFSNYCWSFVKHKPVKSNFRYARQVPIKTPKSEAISKGLMRRGFQCVGPTT
Sbjct: 301 MHKVIQDFGSFSNYCWSFVKHKPVKSNFRYARQVPIKTPKSEAISKGLMRRGFQCVGPTT 360
Query: 361 IYSFMQVSGIVNDHLSCCFRFQDCRDIKRNLRAEPGLIERRLNSPPSSEDSETSREA 417
IYSFMQVSGIVNDHLSCCFRFQDCRDIKRNLRAEPGLIERRLNSPPSSEDSETSREA
Sbjct: 361 IYSFMQVSGIVNDHLSCCFRFQDCRDIKRNLRAEPGLIERRLNSPPSSEDSETSREA 417
>Os09g0420300 DNA glycosylase family protein
Length = 411
Score = 239 bits (610), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 103/189 (54%), Positives = 142/189 (75%), Gaps = 1/189 (0%)
Query: 196 GKTRCSWITVNSEPLYVAFHDEEWGVPVHDDQKLFELLTLSQALAEITWPIILNKRDEFR 255
G RC W+T N++P Y AFHD EWGVPVHDD+KLFE+L LS ALAE+TWP IL+KR+ F+
Sbjct: 167 GPPRCPWVTPNTDPCYAAFHDHEWGVPVHDDKKLFEMLVLSGALAEMTWPAILSKRETFK 226
Query: 256 EMFDGFNYASVSEFTDKKINLLSKSNGNMLLSEQKIRAVVTNAKQMHKVIQDFGSFSNYC 315
E+F F+ V++ +++KI L S LLSE ++R ++ NA+++ KVI++FGSF NYC
Sbjct: 227 EVFMDFDPLLVAKLSERKI-LGPCSPARSLLSEHRLRIIIENAQEVLKVIEEFGSFDNYC 285
Query: 316 WSFVKHKPVKSNFRYARQVPIKTPKSEAISKGLMRRGFQCVGPTTIYSFMQVSGIVNDHL 375
W F+ KP+ FR+ R+VP+KTPK++A+S+ L+RRGF VGPT IY+FMQ G+ NDHL
Sbjct: 286 WGFLNSKPMVGRFRHPREVPMKTPKADAMSQDLLRRGFLGVGPTVIYAFMQAVGMANDHL 345
Query: 376 SCCFRFQDC 384
C+RF +C
Sbjct: 346 VTCYRFGEC 354
>Os06g0649800 DNA glycosylase family protein
Length = 407
Score = 220 bits (560), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 100/193 (51%), Positives = 133/193 (68%), Gaps = 19/193 (9%)
Query: 194 ELGKTRCSWITVNSEPLYVAFHDEEWGVPVHDDQKLFELLTLSQALAEITWPIILNKRDE 253
E GK RC+W+T S+P YV FHDEEWGVPVHDD++LFELL LS ALAE+TWP IL +R
Sbjct: 189 EAGKRRCAWVTPTSDPCYVIFHDEEWGVPVHDDRRLFELLVLSGALAELTWPEILKRRQL 248
Query: 254 FREMFDGFNYASVSEFTDKKINLLSKSNGNMLLSEQKIRAVVTNAKQMHKVIQDFGSFSN 313
FRE+F F+ ++S+ +KK+ + S N LLSEQK+RAVV NA+Q+ K++ +FGSF
Sbjct: 249 FREIFVDFDPVAISKINEKKL-VAPGSVANSLLSEQKLRAVVENARQILKIVDEFGSFDR 307
Query: 314 YCWSFVKHKPVKSNFRYARQVPIKTPKSEAISKGLMRRGFQCVGPTTIYSFMQVSGIVND 373
YCW F+ HKP+ S FRY RQVP+K+PK++ ISK + +G+ ND
Sbjct: 308 YCWGFLNHKPIVSKFRYPRQVPVKSPKADMISKDM------------------AAGLTND 349
Query: 374 HLSCCFRFQDCRD 386
HL CFRF++C +
Sbjct: 350 HLVSCFRFKECNE 362
>Os01g0799500 DNA glycosylase family protein
Length = 391
Score = 207 bits (528), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 96/186 (51%), Positives = 131/186 (70%), Gaps = 3/186 (1%)
Query: 199 RCSWITVNSEPLYVAFHDEEWGVPVHDDQKLFELLTLSQALAEITWPIILNKRDEFREMF 258
RCS+IT S+PLYVA+HDEEWGVPV DD+ LFE+LTLS W IL +R +RE F
Sbjct: 204 RCSFITPYSDPLYVAYHDEEWGVPVRDDELLFEMLTLSGVQVGADWTSILKRRHVYREAF 263
Query: 259 DGFNYASVSEFTDKKINLLSKSNGNMLLSEQKIRAVVTNAKQMHKVIQDFGSFSNYCWSF 318
GFN +V+++T+K++ LS G L IR V NA ++ +V +DFGSFS Y W+F
Sbjct: 264 SGFNVDAVAKYTEKQMASLSAEFG---LDLGTIRGAVNNACRISEVRRDFGSFSKYVWAF 320
Query: 319 VKHKPVKSNFRYARQVPIKTPKSEAISKGLMRRGFQCVGPTTIYSFMQVSGIVNDHLSCC 378
V +KP+ +++Y+R++P+KT KSE+ISK ++RRGF+ VGPT I+SFMQ G+ NDHL C
Sbjct: 321 VNNKPLSPSYKYSRKIPVKTSKSESISKDMVRRGFRFVGPTVIHSFMQAVGLTNDHLVSC 380
Query: 379 FRFQDC 384
R + C
Sbjct: 381 PRHRVC 386
>Os08g0489300 DNA glycosylase family protein
Length = 339
Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 92/186 (49%), Positives = 128/186 (68%), Gaps = 1/186 (0%)
Query: 199 RCSWITVNSEPLYVAFHDEEWGVPVHDDQKLFELLTLSQALAEITWPIILNKRDEFREMF 258
RCSWIT NS+ YV FHDE WGVPV++D +LFELL LS L + W IL +RD +RE F
Sbjct: 140 RCSWITKNSDEAYVQFHDECWGVPVYNDNRLFELLALSGMLIDHNWTEILKRRDMYREAF 199
Query: 259 DGFNYASVSEFTDKKINLLSKSNGNMLLSEQKIRAVVTNAKQMHKVIQDFGSFSNYCWSF 318
F+ ++V++ + + +S N + L+E ++R ++ NAK + KV ++FGSFS Y W
Sbjct: 200 ADFDPSTVAKMDENDVAEIS-GNKELKLAECRVRCIIENAKCIQKVAKEFGSFSGYIWGH 258
Query: 319 VKHKPVKSNFRYARQVPIKTPKSEAISKGLMRRGFQCVGPTTIYSFMQVSGIVNDHLSCC 378
V H+P +++ + +P +TPKSEA+SK L+RRGF+ VGP +YSFMQ SGIV DHL C
Sbjct: 259 VNHRPTVGRYKHHKYIPFRTPKSEAVSKDLVRRGFRLVGPVIVYSFMQASGIVIDHLVDC 318
Query: 379 FRFQDC 384
FRF +C
Sbjct: 319 FRFPEC 324
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,521,771
Number of extensions: 446367
Number of successful extensions: 1232
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1225
Number of HSP's successfully gapped: 5
Length of query: 417
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 314
Effective length of database: 11,657,759
Effective search space: 3660536326
Effective search space used: 3660536326
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)