BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0649800 Os06g0649800|Os06g0649800
(407 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G57970.1 | chr5:23467316-23468910 FORWARD LENGTH=348 306 1e-83
AT1G80850.1 | chr1:30385607-30387272 REVERSE LENGTH=328 256 1e-68
AT1G15970.1 | chr1:5486544-5488494 REVERSE LENGTH=353 250 9e-67
AT1G75090.1 | chr1:28187647-28189612 REVERSE LENGTH=330 235 3e-62
AT1G13635.1 | chr1:4674248-4675784 FORWARD LENGTH=312 201 7e-52
AT5G44680.1 | chr5:18024461-18025893 REVERSE LENGTH=354 183 1e-46
AT3G12710.1 | chr3:4040572-4041828 REVERSE LENGTH=313 176 2e-44
>AT5G57970.1 | chr5:23467316-23468910 FORWARD LENGTH=348
Length = 347
Score = 306 bits (785), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 172/381 (45%), Positives = 216/381 (56%), Gaps = 67/381 (17%)
Query: 5 MAGAPRVRSLNVAETDADARPVLVPGGNKARSGPAAARKPSPKPLRKAD--TAARTXXXX 62
M+GAPRV+S+NVAE A+ R L G ++ P K K LRK + ++ RT
Sbjct: 1 MSGAPRVQSMNVAE--AETRSTL--GSTAKKASPFITHKAVSKSLRKLERSSSGRTGSDE 56
Query: 63 XXXXXXXXXXXXXXXXXXXXXXXXVGKGXXXXXXXXXXXXXXXXXXKAAHDAPVHLNLSL 122
+ + H+ ++ NLSL
Sbjct: 57 KTSYATPTETVSSSSQKHTLNAASILR---------------------RHEQNLNSNLSL 95
Query: 123 NASCSSDASVESLRGRDSSGGRLERSWS-----RVAPAVPRRGXXXXXXXXXXXXXXXXX 177
NAS SSDAS++S R +S GRL RS+S + P+ PR
Sbjct: 96 NASFSSDASMDSFHSR-ASTGRLIRSYSVGSRSKSYPSKPR----------------SVV 138
Query: 178 XXXXXXXXXXXXXGKRRCAWVTPTSDPCYVIFHDEEWGVPVHDDRRLFELLVLSGALAEL 237
K+RC WVTP SDPCY++FHDEEWGVPVHDD+RLFELLVLSGALAE
Sbjct: 139 SEGALDSPPNGSETKKRCTWVTPNSDPCYIVFHDEEWGVPVHDDKRLFELLVLSGALAEH 198
Query: 238 TWPEILKRRQLFREIFVDFDPVAISKINEKKLVAPGSVANSLLSEQKLRAVVENARQILK 297
TWP IL +RQ FRE+F DFDP AI KINEKK++ PGS A++LLS+ KLRAV+ENARQILK
Sbjct: 199 TWPTILSKRQAFREVFADFDPNAIVKINEKKIIGPGSPASTLLSDLKLRAVIENARQILK 258
Query: 298 IVDEFGSFDRYCWGFLNHKPIVSKFRYPRQVPVKSPKADMISKDM--------------- 342
+++E+GSFD+Y W F+ +K IVSKFRY RQVP K+PKA++ISKD+
Sbjct: 259 VIEEYGSFDKYIWSFVKNKAIVSKFRYQRQVPAKTPKAEVISKDLVRRGFRSVGPTVVYS 318
Query: 343 ---AAGLTNDHLVSCFRFKEC 360
AAG+TNDHL SCFRF C
Sbjct: 319 FMQAAGITNDHLTSCFRFHHC 339
>AT1G80850.1 | chr1:30385607-30387272 REVERSE LENGTH=328
Length = 327
Score = 256 bits (655), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 113/188 (60%), Positives = 142/188 (75%), Gaps = 18/188 (9%)
Query: 191 GKRRCAWVTPTSDPCYVIFHDEEWGVPVHDDRRLFELLVLSGALAELTWPEILKRRQLFR 250
G++RCAW+TP SD CY+ FHDEEWGVPVHDD+RLFELL LSGALAEL+W +IL +RQLFR
Sbjct: 132 GRKRCAWITPKSDQCYIAFHDEEWGVPVHDDKRLFELLSLSGALAELSWKDILSKRQLFR 191
Query: 251 EIFVDFDPVAISKINEKKLVAPGSVANSLLSEQKLRAVVENARQILKIVDEFGSFDRYCW 310
E+F+DFDP+AIS++ KK+ +P A +LLSEQKLR+++ENA Q+ KI+ FGSFD+Y W
Sbjct: 192 EVFMDFDPIAISELTNKKITSPEIAATTLLSEQKLRSILENANQVCKIIGAFGSFDKYIW 251
Query: 311 GFLNHKPIVSKFRYPRQVPVKSPKADMISKDM------------------AAGLTNDHLV 352
F+N KP S+FRYPRQVPVK+ KA++ISKD+ AGLTNDHL
Sbjct: 252 NFVNQKPTQSQFRYPRQVPVKTSKAELISKDLVRRGFRSVSPTVIYSFMQTAGLTNDHLT 311
Query: 353 SCFRFKEC 360
CFR +C
Sbjct: 312 CCFRHHDC 319
>AT1G15970.1 | chr1:5486544-5488494 REVERSE LENGTH=353
Length = 352
Score = 250 bits (639), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 109/188 (57%), Positives = 145/188 (77%), Gaps = 18/188 (9%)
Query: 191 GKRRCAWVTPTSDPCYVIFHDEEWGVPVHDDRRLFELLVLSGALAELTWPEILKRRQLFR 250
G++RCAW+TP +DPCYV FHDEEWGVPVHDD++LFELL LSGALAEL+W +IL RR + R
Sbjct: 143 GRKRCAWITPKADPCYVAFHDEEWGVPVHDDKKLFELLCLSGALAELSWTDILSRRHILR 202
Query: 251 EIFVDFDPVAISKINEKKLVAPGSVANSLLSEQKLRAVVENARQILKIVDEFGSFDRYCW 310
E+F+DFDPVA++++N+KKL APG+ A SLLSE K+R++++N+R + KI+ E GS +Y W
Sbjct: 203 EVFMDFDPVAVAELNDKKLTAPGTAAISLLSEVKIRSILDNSRHVRKIIAECGSLKKYMW 262
Query: 311 GFLNHKPIVSKFRYPRQVPVKSPKADMISKDM------------------AAGLTNDHLV 352
F+N+KP S+FRY RQVPVK+ KA+ ISKD+ AAGLTNDHL+
Sbjct: 263 NFVNNKPTQSQFRYQRQVPVKTSKAEFISKDLVRRGFRSVSPTVIYSFMQAAGLTNDHLI 322
Query: 353 SCFRFKEC 360
CFR+++C
Sbjct: 323 GCFRYQDC 330
>AT1G75090.1 | chr1:28187647-28189612 REVERSE LENGTH=330
Length = 329
Score = 235 bits (599), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 106/187 (56%), Positives = 136/187 (72%), Gaps = 18/187 (9%)
Query: 193 RRCAWVTPTSDPCYVIFHDEEWGVPVHDDRRLFELLVLSGALAELTWPEILKRRQLFREI 252
+RC W+TP SDP YV+FHDEEWGVPV DD++LFELLV S ALAE +WP IL+RR FR++
Sbjct: 119 KRCHWITPNSDPIYVLFHDEEWGVPVRDDKKLFELLVFSQALAEFSWPSILRRRDDFRKL 178
Query: 253 FVDFDPVAISKINEKKLVAPGSVANSLLSEQKLRAVVENARQILKIVDEFGSFDRYCWGF 312
F +FDP AI++ EK+L++ +LSEQKLRA+VENA+ +LK+ EFGSF YCW F
Sbjct: 179 FEEFDPSAIAQFTEKRLMSLRVNGCLILSEQKLRAIVENAKSVLKVKQEFGSFSNYCWRF 238
Query: 313 LNHKPIVSKFRYPRQVPVKSPKADMISKDM------------------AAGLTNDHLVSC 354
+NHKP+ + +RY RQVPVKSPKA+ ISKDM A+G+ NDHL +C
Sbjct: 239 VNHKPLRNGYRYGRQVPVKSPKAEYISKDMMQRGFRCVGPTVMYSFLQASGIVNDHLTAC 298
Query: 355 FRFKECN 361
FR++ECN
Sbjct: 299 FRYQECN 305
>AT1G13635.1 | chr1:4674248-4675784 FORWARD LENGTH=312
Length = 311
Score = 201 bits (510), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 90/186 (48%), Positives = 126/186 (67%), Gaps = 18/186 (9%)
Query: 193 RRCAWVTPTSDPCYVIFHDEEWGVPVHDDRRLFELLVLSGALAELTWPEILKRRQLFREI 252
+RC W+T SD YV+FHD++WGVPV+DD LFE L +SG L + W EILKR++ FRE
Sbjct: 115 KRCNWITKKSDEVYVMFHDQQWGVPVYDDNLLFEFLAMSGMLMDYNWTEILKRKEHFREA 174
Query: 253 FVDFDPVAISKINEKKLVAPGSVANSLLSEQKLRAVVENARQILKIVDEFGSFDRYCWGF 312
F +FDP ++K+ EK++ S +L E ++R +V+NA+ I K+V+EFGSF + WGF
Sbjct: 175 FCEFDPNRVAKMGEKEIAEIASNKAIMLQESRVRCIVDNAKCITKVVNEFGSFSSFVWGF 234
Query: 313 LNHKPIVSKFRYPRQVPVKSPKADMISKDM------------------AAGLTNDHLVSC 354
+++KPI++KF+Y R VP++SPKA++ISKDM AAGLT DHLV C
Sbjct: 235 MDYKPIINKFKYSRNVPLRSPKAEIISKDMIKRGFRFVGPVIVHSFMQAAGLTIDHLVDC 294
Query: 355 FRFKEC 360
FR +C
Sbjct: 295 FRHGDC 300
>AT5G44680.1 | chr5:18024461-18025893 REVERSE LENGTH=354
Length = 353
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 87/188 (46%), Positives = 123/188 (65%), Gaps = 22/188 (11%)
Query: 192 KRRCAWVTPTSDPCYVIFHDEEWGVPVHDDRRLFELLVLSGALAELTWPEILKRRQLFRE 251
K+RC+++T +SDP YV +HD+EWGVPVHDD LFELLVL+GA W +LKRR FRE
Sbjct: 163 KKRCSFITTSSDPIYVAYHDKEWGVPVHDDNLLFELLVLTGAQVGSDWTSVLKRRNTFRE 222
Query: 252 IFVDFDPVAISKINEKKLVAPGSVANSL-LSEQKLRAVVENARQILKIVDEFGSFDRYCW 310
F F+ ++ NEKK+ S+ N ++ ++ AVV+NA+QILK+ + GSF++Y W
Sbjct: 223 AFSGFEAELVADFNEKKI---QSIVNDYGINLSQVLAVVDNAKQILKVKRDLGSFNKYIW 279
Query: 311 GFLNHKPIVSKFRYPRQVPVKSPKADMISKDM------------------AAGLTNDHLV 352
GF+ HKP+ +K+ +++PVK+ K++ ISKDM AAGLTNDHL+
Sbjct: 280 GFMKHKPVTTKYTSCQKIPVKTSKSETISKDMVRRGFRFVGPTVIHSLMQAAGLTNDHLI 339
Query: 353 SCFRFKEC 360
+C R EC
Sbjct: 340 TCPRHLEC 347
>AT3G12710.1 | chr3:4040572-4041828 REVERSE LENGTH=313
Length = 312
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 120/187 (64%), Gaps = 20/187 (10%)
Query: 193 RRCAWVTPTSDPCYVIFHDEEWGVPVHDDRRLFELLVLSGALAELTWPEILKRRQLFREI 252
+RC+++TPTSDP YV +HDEEWGVPVHDD+ LFELL LSGA W L++R +R+
Sbjct: 122 QRCSFLTPTSDPIYVAYHDEEWGVPVHDDKTLFELLTLSGAQVGSDWTSTLRKRHDYRKA 181
Query: 253 FVDFDPVAISKINEKKLVAPGSVANSLLSEQKLRAVVENARQILKIVDEFGSFDRYCWGF 312
F++F+ ++K+ EK++ A +S K+R VVENA++I++I F S ++Y WGF
Sbjct: 182 FMEFEAEVVAKLTEKEMNAISIEYKIEMS--KVRGVVENAKKIVEIKKAFVSLEKYLWGF 239
Query: 313 LNHKPIVSKFRYPRQVPVKSPKADMISKDM------------------AAGLTNDHLVSC 354
+NHKPI + ++ ++PVK+ K++ ISKDM AAGLTNDHL++C
Sbjct: 240 VNHKPISTNYKLGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLITC 299
Query: 355 FRFKECN 361
R C
Sbjct: 300 CRHAPCT 306
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.132 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,005,457
Number of extensions: 249130
Number of successful extensions: 666
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 657
Number of HSP's successfully gapped: 7
Length of query: 407
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 306
Effective length of database: 8,337,553
Effective search space: 2551291218
Effective search space used: 2551291218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)