BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0381600 Os09g0381600|AK107716
(208 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0381600 Conserved hypothetical protein 258 2e-69
Os08g0420700 Conserved hypothetical protein 167 5e-42
Os06g0236300 Conserved hypothetical protein 151 4e-37
Os02g0741700 Conserved hypothetical protein 139 1e-33
Os03g0200200 Conserved hypothetical protein 96 2e-20
Os02g0607400 72 3e-13
>Os09g0381600 Conserved hypothetical protein
Length = 208
Score = 258 bits (659), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 134/183 (73%), Positives = 134/183 (73%)
Query: 1 MGNCQAAEAAAVVIQHPGGKVERLYWPTTAADVMRANPGHYVALVILRIXXXXXXXXXXX 60
MGNCQAAEAAAVVIQHPGGKVERLYWPTTAADVMRANPGHYVALVILRI
Sbjct: 1 MGNCQAAEAAAVVIQHPGGKVERLYWPTTAADVMRANPGHYVALVILRISADKAASAAAA 60
Query: 61 XXXXXXXXXXXXXXXXXXKITRVKLLKPKDTLLLGQVYRLITSQEVTKALRARKNEKMRR 120
KITRVKLLKPKDTLLLGQVYRLITSQEVTKALRARKNEKMRR
Sbjct: 61 GDNKTNAGGATGGGGGGAKITRVKLLKPKDTLLLGQVYRLITSQEVTKALRARKNEKMRR 120
Query: 121 CEAIRQQHEQLRRGDPLAGVAXXXXXXXSASDDQDGKRDRHRSSXXXXXXXXXXXXXHWR 180
CEAIRQQHEQLRRGDPLAGVA SASDDQDGKRDRHRSS HWR
Sbjct: 121 CEAIRQQHEQLRRGDPLAGVAEEEEEEESASDDQDGKRDRHRSSGAGAPPAAGGRGRHWR 180
Query: 181 PSL 183
PSL
Sbjct: 181 PSL 183
>Os08g0420700 Conserved hypothetical protein
Length = 189
Score = 167 bits (423), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 100/189 (52%), Positives = 114/189 (60%), Gaps = 14/189 (7%)
Query: 1 MGNCQAAEAAAVVIQHPGGKVERLYWPTTAADVMRANPGHYVALVILRIXXXXXXXXXXX 60
MGNCQAAE AAVVIQHPGGKVERLYWP TAADVMR+NPGHYVALV+LR+
Sbjct: 1 MGNCQAAEVAAVVIQHPGGKVERLYWPATAADVMRSNPGHYVALVLLRVSASSSGGGGGG 60
Query: 61 XXXXXXXXXXX--XXXXXXXKITRVKLLKPKDTLLLGQVYRLITSQEVTKALRARKNEKM 118
KIT++KLLKPK+TLLLG+VYRL+TSQEVTKAL+AR+ EKM
Sbjct: 61 KAEHSAVGAAVGDESGGAAAKITKIKLLKPKETLLLGKVYRLVTSQEVTKALQARRQEKM 120
Query: 119 RRC-EAIRQQHEQLRRGDPLAGVAXXXXXXXSASDDQDGK---RDRHRSSXXXXXXXXXX 174
RRC E H Q + GD A SD Q+ K +DRHRSS
Sbjct: 121 RRCKEVTDHHHRQPQTGDS----AAAGEEQRRPSDHQERKPAEKDRHRSS----GGGGGG 172
Query: 175 XXXHWRPSL 183
+WRPSL
Sbjct: 173 RGRNWRPSL 181
>Os06g0236300 Conserved hypothetical protein
Length = 189
Score = 151 bits (381), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 100/186 (53%), Gaps = 8/186 (4%)
Query: 1 MGNCQAAEAAAVVIQHPGGKVERLYWPTTAADVMRANPGHYVALVILRIXXXXXXXXXXX 60
MGNCQAAEAA VV+QHPGG+VERLYW TTAA+VMRANPGHYVALV LR+
Sbjct: 1 MGNCQAAEAATVVVQHPGGRVERLYWATTAAEVMRANPGHYVALVTLRVAEEKRPPPPPP 60
Query: 61 XXXXXXXXXXXXXXXXXXKITRVKLLKPKDTLLLGQVYRLITSQEVTKALRARKNEKMRR 120
++TRVKLLKP+DTLLLGQ YRLIT EVT+AL+A+K EK RR
Sbjct: 61 PPPARAERRGTGTGTV--RVTRVKLLKPRDTLLLGQAYRLITVDEVTRALQAKKEEKSRR 118
Query: 121 CEAIRQQHEQLRRGDPLAGVAXXXXXXXSASDDQ---DGKRDRHRSSXXXXXXXXXXXXX 177
A QH L A S DD D D+H
Sbjct: 119 AAA---QHHHLESKPAAAAAVAAGVRINSGGDDHTQLDENLDQHDRDGQRSSSATHSRHR 175
Query: 178 HWRPSL 183
WRPSL
Sbjct: 176 QWRPSL 181
>Os02g0741700 Conserved hypothetical protein
Length = 166
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/133 (56%), Positives = 91/133 (68%), Gaps = 17/133 (12%)
Query: 1 MGNCQAAEAAAVVIQHPGGKVERLYWPTTAADVMRANPGHYVALVILRIXXXXXXXXXXX 60
MGNCQAAEAAAVVIQHPGG+VERL W T+AA+VMRANPGHY+ALV LR+
Sbjct: 1 MGNCQAAEAAAVVIQHPGGRVERLCWSTSAAEVMRANPGHYIALVTLRV----------- 49
Query: 61 XXXXXXXXXXXXXXXXXXKITRVKLLKPKDTLLLGQVYRLITSQEVTKALRARKNEKMRR 120
++TRVKLLKPK+TLLLG YRLIT+ EVTKA++ARK EK+R+
Sbjct: 50 ---AEERQDGDGGARRTVRLTRVKLLKPKETLLLGHAYRLITTHEVTKAVQARKEEKVRK 106
Query: 121 CEAIRQQHEQLRR 133
+ QQ E+ R+
Sbjct: 107 AQ---QQLEESRQ 116
>Os03g0200200 Conserved hypothetical protein
Length = 215
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 67/122 (54%), Gaps = 17/122 (13%)
Query: 1 MGNCQAAEAAAVVIQHPGG-KVERLYWPTTAADVMRANPGHYVALVILRIXXXXXXXXXX 59
MGNCQAAE A VVIQHPGG + ER YW +A VM ANPGHYVA VI
Sbjct: 1 MGNCQAAEVATVVIQHPGGGRTERAYWAMSAGAVMAANPGHYVAAVI------------- 47
Query: 60 XXXXXXXXXXXXXXXXXXXKITRVKLLKPKDTLLLGQVYRLITSQEVTKALRARKNEKMR 119
+ +KLL+P DTLLLG+VYRL++ +EV + ++++ K+
Sbjct: 48 ---TSPPAAGASSATPAAAPVKHLKLLRPDDTLLLGRVYRLVSFEEVLREFASKRHVKLS 104
Query: 120 RC 121
R
Sbjct: 105 RA 106
>Os02g0607400
Length = 971
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 52/93 (55%), Gaps = 9/93 (9%)
Query: 36 ANPGHYVALVILRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKITRVKLLKPKDTLLLG 95
ANPG+Y+ALV LR+ ++TRVKLLKP+DTLLLG
Sbjct: 850 ANPGNYIALVTLRVAEEMRPPLPPPARAERHGTGTV-------RVTRVKLLKPRDTLLLG 902
Query: 96 QVYRLITSQEVTKALRARKNEKMRRCEAIRQQH 128
Q YRLIT EVT+ L+A+K EK RR A Q H
Sbjct: 903 QAYRLITVDEVTRVLQAKKEEKSRRAAA--QHH 933
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.133 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,435,972
Number of extensions: 121453
Number of successful extensions: 348
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 346
Number of HSP's successfully gapped: 9
Length of query: 208
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 112
Effective length of database: 12,023,257
Effective search space: 1346604784
Effective search space used: 1346604784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)