Os08g0420700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0420700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.7 | 0.44 | 9.79 | -0.0998 | 1.59 | -0.233 | -1.06 | -3.28 | 0.0505 | 6.55 | 10.31 | 27085 | -- | -- |
| 93.55 | 0.45 | 9.74 | 0.437 | 1.57 | -0.642 | -0.968 | -- | 0.21 | 6.41 | 20.02 | 37709 | -- | -- |
| 90.27 | 0.442 | 9.79 | -0.136 | 1.59 | -0.239 | -- | -3.24 | 0.0373 | 6.55 | 10 | 27203 | -- | -- |
| 95.85 | 0.456 | 9.75 | 0.468 | 1.55 | -0.675 | -- | -- | 0.214 | 6.57 | 20.02 | 37712 | -- | -- |
| 215.53 | 0.684 | 9.84 | 0.346 | -- | -0.468 | -- | -2.74 | 0.188 | -- | 10 | 36796 | -- | -- |
| 104.58 | 0.479 | 9.74 | 0.398 | 1.58 | -- | -0.973 | -- | 0.156 | 6.59 | -- | -- | -- | -- |
| 106.91 | 0.484 | 9.74 | 0.384 | 1.58 | -- | -- | -- | 0.159 | 6.67 | -- | -- | -- | -- |
| 220.08 | 0.691 | 9.73 | 0.553 | -- | -0.818 | -- | -- | 0.371 | -- | 20.02 | 33948 | -- | -- |
| 97.3 | 0.459 | 9.73 | -- | 1.55 | -0.651 | -- | -- | 0.255 | 6.6 | 22.63 | 31945 | -- | -- |
| 236.47 | 0.719 | 9.77 | 0.421 | -- | -- | -- | -- | 0.19 | -- | -- | -- | -- | -- |
| 110.8 | 0.492 | 9.75 | -- | 1.58 | -- | -- | -- | 0.116 | 6.65 | -- | -- | -- | -- |
| 224.25 | 0.697 | 9.75 | -- | -- | -0.733 | -- | -- | 0.304 | -- | 22.26 | 31047 | -- | -- |
| 241.15 | 0.725 | 9.78 | -- | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.19 | humidity | 60.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 3 | 84.57 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 7 | 85.09 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 10 | 85.28 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 11 | 85.29 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 13 | 85.33 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 15 | 85.40 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 7 | 13 |
| 17 | 85.44 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 6 | 8 |
| 26 | 85.51 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 11 | 7 |
| 38 | 85.51 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 8 | 3 |
| 46 | 85.59 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 7 | 5 |
| 68 | 85.69 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 7 | 14 |
| 70 | 85.70 | radiation | 10.0 | 43200 | > th | dose independent | sin | 17 | NA |
| 71 | 85.70 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 85 | 85.84 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 86 | 85.84 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 24 | 7 |
| 102 | 85.88 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 8 | 13 |
| 103 | 85.88 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 17 |
| 104 | 85.89 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 107 | 85.90 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 15 |
| 129 | 85.97 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 143 | 85.98 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 147 | 85.99 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 18 |
| 151 | 86.00 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 18 |
| 154 | 86.00 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 18 |
| 155 | 86.01 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 157 | 86.01 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 160 | 86.01 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 22 | 10 |
| 170 | 86.05 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 16 |
| 172 | 86.06 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 173 | 86.06 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 24 | 7 |
| 176 | 86.07 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 23 | NA |
| 180 | 86.09 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 16 |
| 183 | 86.09 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 16 |
| 217 | 86.13 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 24 | 7 |
| 224 | 86.15 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 226 | 86.15 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 5 |
| 228 | 86.16 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 229 | 86.16 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 5 |
| 255 | 86.24 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 259 | 86.25 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 319 | 86.42 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 12 | 9 |
| 326 | 86.44 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 9 | 7 |
| 331 | 86.45 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 7 | NA |
| 349 | 86.49 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 8 | NA |
| 350 | 86.49 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 8 | NA |
| 351 | 86.49 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 360 | 86.51 | humidity | 80.0 | 43200 | > th | dose independent | sin | 22 | NA |
| 365 | 86.52 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 8 | NA |
| 376 | 86.53 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 377 | 86.53 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 13 |
| 403 | 86.59 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 451 | 86.68 | humidity | 80.0 | 43200 | < th | dose independent | sin | 23 | NA |
| 452 | 86.68 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 479 | 86.72 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 495 | 86.75 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 499 | 86.76 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 7 | 8 |
| 505 | 86.78 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 519 | 86.81 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 554 | 86.84 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 605 | 86.90 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 607 | 86.90 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 7 | 8 |
| 610 | 86.90 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 618 | 86.91 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 619 | 86.91 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 626 | 86.91 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 1 | 4 |
| 647 | 86.93 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 739 | 87.05 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 801 | 87.10 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 22 | 6 |
| 812 | 87.10 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 15 | 15 |
| 818 | 87.11 | atmosphere | 1000.0 | 14400 | > th | dose dependent | sin | 10 | NA |
| 831 | 87.12 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 883 | 87.14 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 884 | 87.14 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 21 | 3 |
| 919 | 87.15 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 23 | 19 |
| 940 | 87.16 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 24 | 17 |
| 949 | 87.16 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 20 | 22 |
| 988 | 87.18 | atmosphere | 1015.0 | 14400 | < th | dose dependent | rect. | 3 | 2 |