BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0420700 Os08g0420700|Os08g0420700
(189 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G60010.1 | chr1:22095660-22096434 REVERSE LENGTH=174 77 5e-15
AT5G67620.1 | chr5:26964891-26965720 REVERSE LENGTH=183 69 2e-12
AT1G10530.1 | chr1:3471805-3472526 REVERSE LENGTH=167 66 9e-12
AT5G50090.1 | chr5:20369961-20370878 FORWARD LENGTH=160 59 1e-09
AT5G62900.1 | chr5:25248872-25249725 FORWARD LENGTH=162 55 3e-08
>AT1G60010.1 | chr1:22095660-22096434 REVERSE LENGTH=174
Length = 173
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 79/190 (41%), Gaps = 18/190 (9%)
Query: 1 MGNCQAAEVAAVVIQHPGGKVERLYWPATAADVMRSNPGHYXXXXXXXXXXXXXXXXXXX 60
MGNCQA + AA+V+QHP GK++R Y P + +++MR PGHY
Sbjct: 1 MGNCQAVDAAALVLQHPDGKIDRYYGPVSVSEIMRMYPGHY-----------VSLIIPLP 49
Query: 61 XXXXXXXXAAVGDESXXXXXXXXXXXXXXXXXXXXXXXVYRLVTSQEVTKALQARRQEKM 120
D+S YRL+TSQEV K L+A++ K
Sbjct: 50 EKNIPATTTTTDDKSERKVVRFTRVKLLRPTENLVLGHAYRLITSQEVMKVLRAKKYAKT 109
Query: 121 RRCKEVTDHHHRQPQTGDSAAAGEEQRRPSD-HQERKPAEKDRHXXXXXXXXXXXXNWRP 179
++ H + ++ ++ SD +Q + ++ + WRP
Sbjct: 110 KK------HQSETSKEKKKPSSEKKIDEESDKNQNLETKDEKQRSVLTNSASSRSKTWRP 163
Query: 180 SLQSISESAS 189
SLQSISE+ S
Sbjct: 164 SLQSISEATS 173
>AT5G67620.1 | chr5:26964891-26965720 REVERSE LENGTH=183
Length = 182
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 34/42 (80%), Gaps = 1/42 (2%)
Query: 1 MGNCQAAEVAAVVIQHPG-GKVERLYWPATAADVMRSNPGHY 41
MGNCQAAE A V+I HP KVER+YW TA+D+M+SNPGHY
Sbjct: 1 MGNCQAAEAATVLIHHPAENKVERIYWSVTASDIMKSNPGHY 42
>AT1G10530.1 | chr1:3471805-3472526 REVERSE LENGTH=167
Length = 166
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 72/189 (38%), Gaps = 23/189 (12%)
Query: 1 MGNCQAAEVAAVVIQHPGGKVERLYWPATAADVMRSNPGHYXXXXXXXXXXXXXXXXXXX 60
MGNCQA A +V+QHPGG ++R Y + +VM PGHY
Sbjct: 1 MGNCQAVNAAVLVLQHPGGIIDRYYSSVSVTEVMAMYPGHYVSLIIPLSEEEEKNIPATE 60
Query: 61 XXXXXXXXAAVGDESXXXXXXXXXXXXXXXXXXXXXXXVYRLVTSQEVTKALQARRQEKM 120
D+ YRL+TSQEV K L+ ++ K
Sbjct: 61 KG---------DDKKQRKAVRFTRVQLLRPTENLVLGHAYRLITSQEVMKVLREKKSAKT 111
Query: 121 RRCKEVTDHHHRQPQTGDSAAAGEEQRRPSDHQERKPAEKDRHXXXXXXXXXXXXNWRPS 180
++ Q + +A +++ P E+K ++ R WRPS
Sbjct: 112 KK---------HQIEKTTTAKKFSDKKVP----EKKQGKQFR-VIRNSTSLLKSKTWRPS 157
Query: 181 LQSISESAS 189
LQSISE+ S
Sbjct: 158 LQSISEATS 166
>AT5G50090.1 | chr5:20369961-20370878 FORWARD LENGTH=160
Length = 159
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 30/40 (75%)
Query: 1 MGNCQAAEVAAVVIQHPGGKVERLYWPATAADVMRSNPGH 40
MGNCQA + A VVIQHP GK E+L P +A+ VM+ NPGH
Sbjct: 1 MGNCQAVDTARVVIQHPNGKEEKLSCPVSASYVMKMNPGH 40
>AT5G62900.1 | chr5:25248872-25249725 FORWARD LENGTH=162
Length = 161
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 1 MGNCQAAEVAAVVIQHPGGKVERLYWPATAADVMRSNPGHY 41
MGNCQAAE A VIQ P GK R Y A++V++S+PGH+
Sbjct: 1 MGNCQAAEAATTVIQQPDGKSVRFYCTVNASEVIKSHPGHH 41
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.124 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,556,394
Number of extensions: 69570
Number of successful extensions: 267
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 5
Length of query: 189
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 96
Effective length of database: 8,556,881
Effective search space: 821460576
Effective search space used: 821460576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 109 (46.6 bits)