BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0420700 Os08g0420700|Os08g0420700
(189 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0420700 Conserved hypothetical protein 244 4e-65
Os09g0381600 Conserved hypothetical protein 125 2e-29
Os06g0236300 Conserved hypothetical protein 97 6e-21
Os02g0741700 Conserved hypothetical protein 91 4e-19
Os03g0200200 Conserved hypothetical protein 66 1e-11
>Os08g0420700 Conserved hypothetical protein
Length = 189
Score = 244 bits (622), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 127/189 (67%), Positives = 127/189 (67%)
Query: 1 MGNCQAAEVAAVVIQHPGGKVERLYWPATAADVMRSNPGHYXXXXXXXXXXXXXXXXXXX 60
MGNCQAAEVAAVVIQHPGGKVERLYWPATAADVMRSNPGHY
Sbjct: 1 MGNCQAAEVAAVVIQHPGGKVERLYWPATAADVMRSNPGHYVALVLLRVSASSSGGGGGG 60
Query: 61 XXXXXXXXAAVGDESXXXXXXXXXXXXXXXXXXXXXXXVYRLVTSQEVTKALQARRQEKM 120
AAVGDES VYRLVTSQEVTKALQARRQEKM
Sbjct: 61 KAEHSAVGAAVGDESGGAAAKITKIKLLKPKETLLLGKVYRLVTSQEVTKALQARRQEKM 120
Query: 121 RRCKEVTDHHHRQPQTGDSAAAGEEQRRPSDHQERKPAEKDRHXXXXXXXXXXXXNWRPS 180
RRCKEVTDHHHRQPQTGDSAAAGEEQRRPSDHQERKPAEKDRH NWRPS
Sbjct: 121 RRCKEVTDHHHRQPQTGDSAAAGEEQRRPSDHQERKPAEKDRHRSSGGGGGGRGRNWRPS 180
Query: 181 LQSISESAS 189
LQSISESAS
Sbjct: 181 LQSISESAS 189
>Os09g0381600 Conserved hypothetical protein
Length = 208
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 96/196 (48%), Gaps = 14/196 (7%)
Query: 1 MGNCQAAEVAAVVIQHPGGKVERLYWPATAADVMRSNPGHYXXXXXXXXXXXXXXXXXXX 60
MGNCQAAE AAVVIQHPGGKVERLYWP TAADVMR+NPGHY
Sbjct: 1 MGNCQAAEAAAVVIQHPGGKVERLYWPTTAADVMRANPGHYVALVILRISADKAASAAAA 60
Query: 61 XXXXXXXXAAVGDESXXXXXXXXXXXXXXXXXXXXXXXVYRLVTSQEVTKALQARRQEKM 120
A VYRL+TSQEVTKAL+AR+ EKM
Sbjct: 61 GDNKTNAGGA--TGGGGGGAKITRVKLLKPKDTLLLGQVYRLITSQEVTKALRARKNEKM 118
Query: 121 RRCKEVTDHHHRQPQTGDSAAA----GEEQRRPSDHQERKPAEKDRHXXX----XXXXXX 172
RRC E H Q + GD A EE+ SD Q+ K +DRH
Sbjct: 119 RRC-EAIRQQHEQLRRGDPLAGVAEEEEEEESASDDQDGK---RDRHRSSGAGAPPAAGG 174
Query: 173 XXXNWRPSLQSISESA 188
+WRPSLQSISE+A
Sbjct: 175 RGRHWRPSLQSISEAA 190
>Os06g0236300 Conserved hypothetical protein
Length = 189
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 82/193 (42%), Gaps = 8/193 (4%)
Query: 1 MGNCQAAEVAAVVIQHPGGKVERLYWPATAADVMRSNPGHYXXXXXXXXXXXXXXXXXXX 60
MGNCQAAE A VV+QHPGG+VERLYW TAA+VMR+NPGHY
Sbjct: 1 MGNCQAAEAATVVVQHPGGRVERLYWATTAAEVMRANPGHYVALVTLRVAEEKRPPPPPP 60
Query: 61 XXXXXXXXAAVGDESXXXXXXXXXXXXXXXXXXXXXXXVYRLVTSQEVTKALQARRQEKM 120
G + YRL+T EVT+ALQA+++EK
Sbjct: 61 PPPARAERRGTGTGT----VRVTRVKLLKPRDTLLLGQAYRLITVDEVTRALQAKKEEKS 116
Query: 121 RRCKEVTDHHHRQPQTGDSAAAGEEQRRPSDHQERKPAEKDRHXXXXXXXXXXXXN---- 176
RR H +P + AAG D + D+H +
Sbjct: 117 RRAAAQHHHLESKPAAAAAVAAGVRINSGGDDHTQLDENLDQHDRDGQRSSSATHSRHRQ 176
Query: 177 WRPSLQSISESAS 189
WRPSL SI+E S
Sbjct: 177 WRPSLHSIAEVRS 189
>Os02g0741700 Conserved hypothetical protein
Length = 166
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 68/136 (50%), Gaps = 16/136 (11%)
Query: 1 MGNCQAAEVAAVVIQHPGGKVERLYWPATAADVMRSNPGHYXXXXXXXXXXXXXXXXXXX 60
MGNCQAAE AAVVIQHPGG+VERL W +AA+VMR+NPGHY
Sbjct: 1 MGNCQAAEAAAVVIQHPGGRVERLCWSTSAAEVMRANPGHYIALVTLRVAEERQD----- 55
Query: 61 XXXXXXXXAAVGDESXXXXXXXXXXXXXXXXXXXXXXXVYRLVTSQEVTKALQARRQEKM 120
GD YRL+T+ EVTKA+QAR++EK+
Sbjct: 56 -----------GDGGARRTVRLTRVKLLKPKETLLLGHAYRLITTHEVTKAVQARKEEKV 104
Query: 121 RRCKEVTDHHHRQPQT 136
R+ ++ + ++ Q+
Sbjct: 105 RKAQQQLEESRQKLQS 120
>Os03g0200200 Conserved hypothetical protein
Length = 215
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 33/42 (78%), Gaps = 1/42 (2%)
Query: 1 MGNCQAAEVAAVVIQHP-GGKVERLYWPATAADVMRSNPGHY 41
MGNCQAAEVA VVIQHP GG+ ER YW +A VM +NPGHY
Sbjct: 1 MGNCQAAEVATVVIQHPGGGRTERAYWAMSAGAVMAANPGHY 42
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.124 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,505,525
Number of extensions: 140266
Number of successful extensions: 652
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 650
Number of HSP's successfully gapped: 6
Length of query: 189
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 94
Effective length of database: 12,075,471
Effective search space: 1135094274
Effective search space used: 1135094274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 153 (63.5 bits)