Os09g0381600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0381600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 179.78 | 0.63 | 8.91 | -2.35 | 2.78 | 1.76 | 0.991 | -6.61 | -0.094 | 7.47 | 22.79 | 1316 | -- | -- |
| 178.69 | 0.623 | 8.79 | -1.33 | 2.71 | 2.27 | 0.928 | -- | -0.0258 | 7.62 | 13.57 | 9636 | -- | -- |
| 182.42 | 0.629 | 8.91 | -2.35 | 2.78 | 1.78 | -- | -6.72 | -0.106 | 7.47 | 22.75 | 1293 | -- | -- |
| 179.16 | 0.623 | 8.77 | -1.21 | 2.83 | 2.24 | -- | -- | 0.0176 | 7.34 | 10.9 | 9415 | -- | -- |
| 592.88 | 1.13 | 8.98 | -2.34 | -- | 1.82 | -- | -6.61 | -0.0406 | -- | 23.27 | 1359 | -- | -- |
| 256.7 | 0.751 | 8.62 | 0.00502 | 2.8 | -- | 1.03 | -- | 0.705 | 7.25 | -- | -- | -- | -- |
| 259.52 | 0.754 | 8.62 | 0.026 | 2.8 | -- | -- | -- | 0.702 | 7.21 | -- | -- | -- | -- |
| 587.58 | 1.13 | 8.84 | -1.16 | -- | 2.3 | -- | -- | 0.0603 | -- | 10.69 | 8619 | -- | -- |
| 203.91 | 0.665 | 8.7 | -- | 2.79 | 1.54 | -- | -- | 0.344 | 7.32 | 12.88 | 8066 | -- | -- |
| 674.43 | 1.21 | 8.69 | 0.0766 | -- | -- | -- | -- | 0.751 | -- | -- | -- | -- | -- |
| 259.54 | 0.754 | 8.62 | -- | 2.8 | -- | -- | -- | 0.699 | 7.21 | -- | -- | -- | -- |
| 611.61 | 1.15 | 8.77 | -- | -- | 1.62 | -- | -- | 0.356 | -- | 12 | 8601 | -- | -- |
| 674.58 | 1.21 | 8.69 | -- | -- | -- | -- | -- | 0.742 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 162.13 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 2 | 162.18 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 4 | 162.30 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 5 | 162.45 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 12 | 162.62 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 6 |
| 51 | 163.76 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 58 | 163.92 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 10 |
| 70 | 164.43 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 82 | 164.97 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 87 | 165.26 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 94 | 165.58 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 5 |
| 95 | 165.59 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 11 |
| 96 | 165.60 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 18 |
| 98 | 165.73 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 20 |
| 99 | 165.74 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 13 |
| 100 | 165.75 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 13 |
| 101 | 165.78 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 103 | 165.83 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 104 | 165.83 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 105 | 165.90 | wind | 9 | 43200 | < th | dose dependent | rect. | 24 | 16 |
| 107 | 165.95 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 14 |
| 109 | 165.97 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 20 |
| 111 | 166.01 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 115 | 166.04 | wind | 1 | 43200 | > th | dose dependent | rect. | 24 | 16 |
| 122 | 166.17 | wind | 5 | 43200 | < th | dose dependent | rect. | 8 | 5 |
| 129 | 166.23 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 7 |
| 142 | 166.32 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 150 | 166.41 | wind | 9 | 43200 | < th | dose dependent | sin | 3 | NA |
| 153 | 166.45 | wind | 1 | 43200 | > th | dose dependent | sin | 3 | NA |
| 170 | 166.53 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 10 |
| 184 | 166.61 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 266 | 167.35 | wind | 3 | 43200 | > th | dose independent | rect. | 24 | 14 |
| 289 | 167.48 | wind | 5 | 43200 | < th | dose dependent | rect. | 6 | 7 |
| 291 | 167.49 | wind | 3 | 43200 | > th | dose independent | sin | 5 | NA |
| 297 | 167.55 | wind | 1 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 323 | 167.73 | wind | 5 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 341 | 167.90 | wind | 3 | 43200 | > th | dose dependent | rect. | 3 | 19 |
| 357 | 167.98 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 358 | 167.98 | humidity | 80 | 43200 | < th | dose dependent | rect. | 21 | 6 |
| 368 | 168.05 | wind | 3 | 43200 | < th | dose independent | sin | 6 | NA |
| 375 | 168.09 | wind | 3 | 43200 | > th | dose dependent | rect. | 24 | 22 |
| 376 | 168.10 | wind | 3 | 43200 | < th | dose independent | rect. | 24 | 14 |
| 392 | 168.15 | wind | 3 | 43200 | > th | dose dependent | rect. | 3 | 22 |
| 399 | 168.21 | wind | 5 | 14400 | > th | dose dependent | rect. | 10 | 2 |
| 463 | 168.52 | wind | 9 | 43200 | < th | dose dependent | rect. | 16 | 21 |
| 470 | 168.54 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 23 |
| 501 | 168.70 | wind | 3 | 43200 | > th | dose dependent | no | NA | NA |
| 521 | 168.78 | wind | 3 | 43200 | > th | dose dependent | rect. | 14 | 23 |
| 527 | 168.81 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 23 |
| 535 | 168.86 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 538 | 168.88 | wind | 1 | 43200 | > th | dose dependent | rect. | 16 | 21 |
| 543 | 168.92 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 544 | 168.92 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 558 | 168.97 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 9 |
| 604 | 169.18 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 11 |
| 608 | 169.19 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 653 | 169.38 | wind | 5 | 43200 | < th | dose dependent | rect. | 20 | 9 |
| 657 | 169.40 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 20 |
| 660 | 169.41 | radiation | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 663 | 169.44 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 664 | 169.44 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 684 | 169.52 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 759 | 169.84 | wind | 3 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 864 | 170.33 | wind | 1 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 872 | 170.35 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 17 |
| 880 | 170.39 | wind | 9 | 43200 | < th | dose dependent | no | NA | NA |
| 896 | 170.46 | humidity | 80 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 905 | 170.50 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 23 |
| 947 | 170.76 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 17 |
| 981 | 170.90 | wind | 5 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 992 | 170.93 | wind | 5 | 43200 | < th | dose independent | sin | 0 | NA |
| 997 | 170.94 | wind | 5 | 43200 | < th | dose dependent | rect. | 19 | 12 |