BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0381600 Os09g0381600|AK107716
(208 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G60010.1 | chr1:22095660-22096434 REVERSE LENGTH=174 105 1e-23
AT5G62900.1 | chr5:25248872-25249725 FORWARD LENGTH=162 101 3e-22
AT5G50090.1 | chr5:20369961-20370878 FORWARD LENGTH=160 99 2e-21
AT5G67620.1 | chr5:26964891-26965720 REVERSE LENGTH=183 96 1e-20
AT1G10530.1 | chr1:3471805-3472526 REVERSE LENGTH=167 94 3e-20
>AT1G60010.1 | chr1:22095660-22096434 REVERSE LENGTH=174
Length = 173
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 72/123 (58%), Gaps = 9/123 (7%)
Query: 1 MGNCQAAEAAAVVIQHPGGKVERLYWPTTAADVMRANPGHYVALVILRIXXXXXXXXXXX 60
MGNCQA +AAA+V+QHP GK++R Y P + +++MR PGHYV+L+I
Sbjct: 1 MGNCQAVDAAALVLQHPDGKIDRYYGPVSVSEIMRMYPGHYVSLII---------PLPEK 51
Query: 61 XXXXXXXXXXXXXXXXXXKITRVKLLKPKDTLLLGQVYRLITSQEVTKALRARKNEKMRR 120
+ TRVKLL+P + L+LG YRLITSQEV K LRA+K K ++
Sbjct: 52 NIPATTTTTDDKSERKVVRFTRVKLLRPTENLVLGHAYRLITSQEVMKVLRAKKYAKTKK 111
Query: 121 CEA 123
++
Sbjct: 112 HQS 114
>AT5G62900.1 | chr5:25248872-25249725 FORWARD LENGTH=162
Length = 161
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 71/120 (59%), Gaps = 22/120 (18%)
Query: 1 MGNCQAAEAAAVVIQHPGGKVERLYWPTTAADVMRANPGHYVALVILRIXXXXXXXXXXX 60
MGNCQAAEAA VIQ P GK R Y A++V++++PGH+VAL++
Sbjct: 1 MGNCQAAEAATTVIQQPDGKSVRFYCTVNASEVIKSHPGHHVALLL-------------- 46
Query: 61 XXXXXXXXXXXXXXXXXXKITRVKLLKPKDTLLLGQVYRLITSQEVTKALRARKNEKMRR 120
++TR+KLL+P D LLLG VYRLI+S+EV K +RA+K+ KM++
Sbjct: 47 --------SSAVPHGGSLRVTRIKLLRPSDNLLLGHVYRLISSEEVMKGIRAKKSGKMKK 98
>AT5G50090.1 | chr5:20369961-20370878 FORWARD LENGTH=160
Length = 159
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 70/120 (58%), Gaps = 16/120 (13%)
Query: 1 MGNCQAAEAAAVVIQHPGGKVERLYWPTTAADVMRANPGHYVALVILRIXXXXXXXXXXX 60
MGNCQA + A VVIQHP GK E+L P +A+ VM+ NPGH V+L+I
Sbjct: 1 MGNCQAVDTARVVIQHPNGKEEKLSCPVSASYVMKMNPGHCVSLLI-------------- 46
Query: 61 XXXXXXXXXXXXXXXXXXKITRVKLLKPKDTLLLGQVYRLITSQEVTKALRARKNEKMRR 120
++TR+KLL+P DTL+LG VYRLIT++EV K L A+K K+++
Sbjct: 47 --STTALSSASSGHGGPLRLTRIKLLRPTDTLVLGHVYRLITTKEVMKGLMAKKCSKLKK 104
>AT5G67620.1 | chr5:26964891-26965720 REVERSE LENGTH=183
Length = 182
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 68/121 (56%), Gaps = 22/121 (18%)
Query: 1 MGNCQAAEAAAVVIQHPG-GKVERLYWPTTAADVMRANPGHYVALVILRIXXXXXXXXXX 59
MGNCQAAEAA V+I HP KVER+YW TA+D+M++NPGHYVA+V+
Sbjct: 1 MGNCQAAEAATVLIHHPAENKVERIYWSVTASDIMKSNPGHYVAVVV------------- 47
Query: 60 XXXXXXXXXXXXXXXXXXXKITRVKLLKPKDTLLLGQVYRLITSQEVTKALRARKNEKMR 119
+ ++KLL+P DTLL+G VYRL++ +EV +K K+
Sbjct: 48 --------TSPTMKNEKGLPLKQLKLLRPDDTLLIGHVYRLVSFEEVLNEFATKKCVKLG 99
Query: 120 R 120
+
Sbjct: 100 K 100
>AT1G10530.1 | chr1:3471805-3472526 REVERSE LENGTH=167
Length = 166
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 7/120 (5%)
Query: 1 MGNCQAAEAAAVVIQHPGGKVERLYWPTTAADVMRANPGHYVALVILRIXXXXXXXXXXX 60
MGNCQA AA +V+QHPGG ++R Y + +VM PGHYV+L+I
Sbjct: 1 MGNCQAVNAAVLVLQHPGGIIDRYYSSVSVTEVMAMYPGHYVSLII-------PLSEEEE 53
Query: 61 XXXXXXXXXXXXXXXXXXKITRVKLLKPKDTLLLGQVYRLITSQEVTKALRARKNEKMRR 120
+ TRV+LL+P + L+LG YRLITSQEV K LR +K+ K ++
Sbjct: 54 KNIPATEKGDDKKQRKAVRFTRVQLLRPTENLVLGHAYRLITSQEVMKVLREKKSAKTKK 113
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.133 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,602,308
Number of extensions: 65614
Number of successful extensions: 147
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 9
Length of query: 208
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 114
Effective length of database: 8,529,465
Effective search space: 972359010
Effective search space used: 972359010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)