BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0327000 Os09g0327000|Os09g0327000
(415 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0327000 Protein of unknown function DUF599 family protein 785 0.0
Os08g0377500 Protein of unknown function DUF599 family protein 305 4e-83
Os08g0153900 Protein of unknown function DUF599 family protein 138 7e-33
Os02g0292800 Protein of unknown function DUF599 family protein 137 2e-32
Os08g0153800 Protein of unknown function DUF599 family protein 125 7e-29
>Os09g0327000 Protein of unknown function DUF599 family protein
Length = 415
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/415 (93%), Positives = 387/415 (93%)
Query: 1 MQKPGIPGCGVLMLCLAWKLLKNLSVYQCFRHLNKVLTPTFSGPDLQVPNISVMDFPPGK 60
MQKPGIPGCGVLMLCLAWKLLKNLSVYQCFRHLNKVLTPTFSGPDLQVPNISVMDFPPGK
Sbjct: 1 MQKPGIPGCGVLMLCLAWKLLKNLSVYQCFRHLNKVLTPTFSGPDLQVPNISVMDFPPGK 60
Query: 61 LLLVNILAFLFIERLLLQDKKLSTSFYIQLNMWTPKRNKLKICGWIMDMSKNLEETLLVN 120
LLLVNILAFLFIERLLLQDKKLSTSFYIQLNMWTPKRNKLKICGWIMDMSKNLEETLLVN
Sbjct: 61 LLLVNILAFLFIERLLLQDKKLSTSFYIQLNMWTPKRNKLKICGWIMDMSKNLEETLLVN 120
Query: 121 ERNMDKNSLKGAIDHEACSSVVGRTAQTMHNCKSSMDLVLVPCGLAIMVGYHLMLLHRIL 180
ERNMDKNSLKGAIDHEACSSVVGRTAQTMHNCKSSMDLVLVPCGLAIMVGYHLMLLHRIL
Sbjct: 121 ERNMDKNSLKGAIDHEACSSVVGRTAQTMHNCKSSMDLVLVPCGLAIMVGYHLMLLHRIL 180
Query: 181 RHPHTTVIGYENHNKLAWVERMLQAAAPEESALALGVISDNISAATTLASLCIALGSLIG 240
RHPHTTVIGYENHNKLAWVERMLQAAAPEESALALGVISDNISAATTLASLCIALGSLIG
Sbjct: 181 RHPHTTVIGYENHNKLAWVERMLQAAAPEESALALGVISDNISAATTLASLCIALGSLIG 240
Query: 241 AWVSSSPAPGAAGVVVLGYGDGSHATATVKCVALLACFLASFTCFIQSARYFVHASFLMS 300
AWVSSSPAPGAAGVVVLGYGDGSHATATVKCVALLACFLASFTCFIQSARYFVHASFLMS
Sbjct: 241 AWVSSSPAPGAAGVVVLGYGDGSHATATVKCVALLACFLASFTCFIQSARYFVHASFLMS 300
Query: 301 ALAGDAAPPVGDAQRAVVRGGNFWAAGLRALYLATALLMWVFGPVPMLACSVLTVAALHR 360
ALAGDAAPPVGDAQRAVVRGGNFWAAGLRALYLATALLMWVFGPVPMLACSVLTVAALHR
Sbjct: 301 ALAGDAAPPVGDAQRAVVRGGNFWAAGLRALYLATALLMWVFGPVPMLACSVLTVAALHR 360
Query: 361 LDANSMPLHHHRFTARSTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSTATFLC 415
LDANSMPLHHHRFTARSTD FSTATFLC
Sbjct: 361 LDANSMPLHHHRFTARSTDASPATAPVAAARSAVARGGRAGNGNTVAFSTATFLC 415
>Os08g0377500 Protein of unknown function DUF599 family protein
Length = 262
Score = 305 bits (781), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 151/224 (67%), Positives = 175/224 (78%), Gaps = 6/224 (2%)
Query: 153 KSSMDLVLVPCGLAIMVGYHLMLLHRILRHPHTTVIGYENHNKLAWVERMLQAAAPEESA 212
KSS+DLVLVPCGL IM GYHL+LL+RILR P TVIGYENHNKLAWV RM+QA+ P+E+
Sbjct: 8 KSSLDLVLVPCGLVIMFGYHLILLYRILRRPAATVIGYENHNKLAWVRRMVQAS-PDETG 66
Query: 213 LALGVISDNISAATTLASLCIALGSLIGAWVSSSPAPGAAGVVVLGYGDGSHATATVKCV 272
LAL VIS NISA+T LASLCIALGSLIGAWVSS+ + L YGD + ATATVK +
Sbjct: 67 LALSVISSNISASTNLASLCIALGSLIGAWVSST---SKVFMTELVYGDRTQATATVKYI 123
Query: 273 ALLACFLASFTCFIQSARYFVHASFLMSALAGDAAPPVGDAQRAVVRGGNFWAAGLRALY 332
+LL CFL SFTCFI SARY+V ASFL++ L D P Q AV+RGGNFW+ GLRALY
Sbjct: 124 SLLVCFLVSFTCFIHSARYYVQASFLITTLDSDV--PASYIQHAVIRGGNFWSMGLRALY 181
Query: 333 LATALLMWVFGPVPMLACSVLTVAALHRLDANSMPLHHHRFTAR 376
AT LLMW+FGP+PM CSVL V LH LD+NS+PLH+H+FT R
Sbjct: 182 FATTLLMWIFGPIPMFTCSVLMVFILHLLDSNSLPLHNHQFTIR 225
>Os08g0153900 Protein of unknown function DUF599 family protein
Length = 276
Score = 138 bits (348), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 124/229 (54%), Gaps = 17/229 (7%)
Query: 149 MHNCKSSMDLVLVPCGLAIMVGYHLMLLHRILRHPHTTVIGYENHNKLAWVERMLQAAAP 208
M +D VLVP G+A+MV YH LL RI R P TTVIG N+ WV +++ A+
Sbjct: 2 MKKTSKELDYVLVPMGMAVMVAYHAWLLLRIRRRPATTVIGINAINRRIWVRHVMEEASG 61
Query: 209 EESALALGVISDNISAATTLASLCIALGSLIGAWVSSSPA-----PGAA---GVVVLGYG 260
+ + LA+ + ++I A+T LAS+ I L SL+ A ++S A PGA G +V+ G
Sbjct: 62 KHAVLAVQTMRNSIMASTVLASVAITLSSLVAALMASGVAHGIFSPGAGDGQGEIVV--G 119
Query: 261 DGSHATATVKCVALLACFLASFTCFIQSARYFVHASFLMS----ALAGDAAPP---VGDA 313
G ++K A+L CFL +F +QS RY+ H L++ A P V
Sbjct: 120 AGGETALSIKFFAILVCFLVAFLLNVQSIRYYSHTGILVNVPLHAHRHRRRRPGLAVDYV 179
Query: 314 QRAVVRGGNFWAAGLRALYLATALLMWVFGPVPMLACSVLTVAALHRLD 362
+ RG FW+ G+RA Y + + +W+FGP+PM A + V AL+ LD
Sbjct: 180 TATLNRGSYFWSLGVRAFYFSCPVFLWLFGPIPMFASCLAMVCALYFLD 228
>Os02g0292800 Protein of unknown function DUF599 family protein
Length = 250
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 120/226 (53%), Gaps = 23/226 (10%)
Query: 153 KSSMDLVLVPCGLAIMVGYHLMLLHRILRHPHTTVIGYENHNKLAWVERMLQAAAPEESA 212
K +D VL+P G+A+MVGYH LL RI R P TTVIG N+ WV +++ A+ + +
Sbjct: 3 KEELDYVLIPLGMALMVGYHAWLLLRIRRRPATTVIGVNAINRRIWVRHIMEEASGKHAV 62
Query: 213 LALGVISDNISAATTLASLCIALGSLIGAWVSSSPAPGAAGVVV---LGYGDGSHATATV 269
LA+ I +NI A+T LAS I L SLI +SS+ G G++ L G +V
Sbjct: 63 LAVQTIRNNIMASTLLASTAITLSSLIAILMSSAGGGGGDGLLPGAPLVVGAAGETALSV 122
Query: 270 KCVALLACFLASFTCFIQSARYFVHASFLMSALAGDAAPPVGDAQR-------------A 316
K A+L CFL +F +QS RY+ H S L++ PV QR
Sbjct: 123 KFFAILVCFLVAFLLNVQSIRYYSHTSTLVNV-------PVRLIQRRRRPGLAVDYVTAT 175
Query: 317 VVRGGNFWAAGLRALYLATALLMWVFGPVPMLACSVLTVAALHRLD 362
+ RG FW+ G RA Y + + +W+FGP+PM A V AL+ LD
Sbjct: 176 LNRGSYFWSLGARAFYFSCPVFLWLFGPIPMFAACAAMVCALYFLD 221
>Os08g0153800 Protein of unknown function DUF599 family protein
Length = 235
Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 115/208 (55%), Gaps = 10/208 (4%)
Query: 165 LAIMVGYHLMLLHRILRHPHTTVIGYENHNKLAWVERMLQAAAPEESALALGVISDNISA 224
+A+MV YH LL RI R P TTVIG N+ WV +++ + + + LA+ + ++I A
Sbjct: 1 MAVMVAYHAWLLLRIRRRPATTVIGINAINRRIWVRHVMEEPSGKHAVLAVQTMRNSIMA 60
Query: 225 ATTLASLCIALGSLIGAWVSSSPAPG---AAGVVVLGYGDGSHATATVKCVALLACFLAS 281
+T LAS+ I L SL+ A ++S A G ++G V+G G A +VK A+L CFL +
Sbjct: 61 STVLASVAITLSSLVAALMASGVAHGIFVSSGHAVVGGGVAGEAELSVKFFAILVCFLLA 120
Query: 282 FTCFIQSARYFVHASFLMS----ALAGDAAPP---VGDAQRAVVRGGNFWAAGLRALYLA 334
F +QS RY+ H L++ A P V + RG FW+ G+RA Y +
Sbjct: 121 FLLNVQSIRYYSHTGLLVNVPLHAHRHRRRRPGLAVDYVTATLNRGSYFWSLGVRAFYFS 180
Query: 335 TALLMWVFGPVPMLACSVLTVAALHRLD 362
+ +W+FGP+PM A + V AL+ LD
Sbjct: 181 CPVFLWLFGPIPMFAACLAMVCALYFLD 208
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,358,042
Number of extensions: 524419
Number of successful extensions: 1925
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1912
Number of HSP's successfully gapped: 7
Length of query: 415
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 312
Effective length of database: 11,657,759
Effective search space: 3637220808
Effective search space used: 3637220808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 157 (65.1 bits)