BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0132600 Os09g0132600|AK072233
(398 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0132600 Conserved hypothetical protein 405 e-113
Os09g0509000 Conserved hypothetical protein 343 1e-94
Os08g0139100 Similar to DAG protein, chloroplast precursor 128 9e-30
Os06g0116600 Proteinase inhibitor, propeptide domain contai... 120 1e-27
Os11g0216400 Proteinase inhibitor, propeptide domain contai... 111 1e-24
Os04g0601800 Similar to Plastid protein 66 4e-11
>Os09g0132600 Conserved hypothetical protein
Length = 398
Score = 405 bits (1041), Expect = e-113, Method: Compositional matrix adjust.
Identities = 219/347 (63%), Positives = 219/347 (63%)
Query: 52 TQPATSSLRDSSPNWSNRPPKETILLDGCDFEHWLVVMDXXXXXXXXXXXTRDEIIDGYI 111
TQPATSSLRDSSPNWSNRPPKETILLDGCDFEHWLVVMD TRDEIIDGYI
Sbjct: 52 TQPATSSLRDSSPNWSNRPPKETILLDGCDFEHWLVVMDPPPGDPSNPEPTRDEIIDGYI 111
Query: 112 KTLAQIVGSEDEARHKIYSVSTRHYFAFGALVSEELSYKLKELPKVRWVLPDSYLDVRNK 171
KTLAQIVGSEDEARHKIYSVSTRHYFAFGALVSEELSYKLKELPKVRWVLPDSYLDVRNK
Sbjct: 112 KTLAQIVGSEDEARHKIYSVSTRHYFAFGALVSEELSYKLKELPKVRWVLPDSYLDVRNK 171
Query: 172 DYGGEPFINGEAVPYDPKYHEEWVXXXXXXXXXXXXXXXXXXXXXXXXFERRRENMHNFQ 231
DYGGEPFINGEAVPYDPKYHEEWV FERRRENMHNFQ
Sbjct: 172 DYGGEPFINGEAVPYDPKYHEEWVRNNARANERTRRNDRPRNFDRSRNFERRRENMHNFQ 231
Query: 232 NRDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAPNPQAGYTNYQG 291
NRDV HAPNPQAGYTNYQG
Sbjct: 232 NRDVPPGQGFNSPPPPGQGPVLPRDAPPMPPPPSPPNPGAPPSYQPHAPNPQAGYTNYQG 291
Query: 292 GVPGYQGRAPGYQGGNQEYRGXXXXXXSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 351
GVPGYQGRAPGYQGGNQEYRG SA
Sbjct: 292 GVPGYQGRAPGYQGGNQEYRGPPPPPPSAYQGNNPGYQGGGPGYHGGNPPPYQAGNPPPY 351
Query: 352 XXGNPVFXXXXXXXXXXXXNPSYQQGSDNYNAGAPAYKRDEPGRNYQ 398
GNPVF NPSYQQGSDNYNAGAPAYKRDEPGRNYQ
Sbjct: 352 QAGNPVFAGGAPGYQGQGGNPSYQQGSDNYNAGAPAYKRDEPGRNYQ 398
>Os09g0509000 Conserved hypothetical protein
Length = 396
Score = 343 bits (880), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 200/353 (56%), Positives = 207/353 (58%), Gaps = 18/353 (5%)
Query: 52 TQPATSSLRDSSPNWSNRPPKETILLDGCDFEHWLVVMDXXXXXXXXXXXTRDEIIDGYI 111
TQPATSSLRDSSPNWSNRPPKETILLDGCDFEHWLVV++ TRDEIIDGYI
Sbjct: 56 TQPATSSLRDSSPNWSNRPPKETILLDGCDFEHWLVVVEPPPGDPSNPEPTRDEIIDGYI 115
Query: 112 KTLAQIVGSEDEARHKIYSVSTRHYFAFGALVSEELSYKLKELPKVRWVLPDSYLDVRNK 171
KTLAQ+VGSE+EARHKIYSVSTRHYFAFGALVSEELSYKLKELPKVRWVLPDSYLDVRNK
Sbjct: 116 KTLAQVVGSEEEARHKIYSVSTRHYFAFGALVSEELSYKLKELPKVRWVLPDSYLDVRNK 175
Query: 172 DYGGEPFINGEAVPYDPKYHEEWVXXXXXXXXXXXXXXXXXXXXXXXXFERRRENMHNFQ 231
DYGGEPFINGEAVPYDPKYHEEWV FERRRENM NFQ
Sbjct: 176 DYGGEPFINGEAVPYDPKYHEEWVRNNARANERSRRNDRPRNFDRSRNFERRRENMQNFQ 235
Query: 232 NRDVX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAPNPQAGY 286
NRDV HAPNPQ GY
Sbjct: 236 NRDVPPGQGFNSPPPPGQGPVPPRDAPPMHHAQGNVPPPPPPNAGPPNYQPHAPNPQ-GY 294
Query: 287 TNY-QGGVPGYQGRAPGYQGGNQEYRGXXXXXXSAXXXXXXXXXXXXXXXXXXXXXXXXX 345
TNY QGG PGYQG PGYQG NQ Y+G SA
Sbjct: 295 TNYQQGGAPGYQGGPPGYQGSNQGYQGPPPPPPSA--------YQGNNPGYQGGGPGYQG 346
Query: 346 XXXXXXXXGNPVFXXXXXXXXXXXXNPSYQQGSDNYNAGAPAYKRDEPGRNYQ 398
GNP + NPSYQQG DNYNAG PAY+RD GRNYQ
Sbjct: 347 GNPPPYQGGNPGY---APGYHGQGGNPSYQQGGDNYNAGVPAYERDGQGRNYQ 396
>Os08g0139100 Similar to DAG protein, chloroplast precursor
Length = 229
Score = 128 bits (321), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 81/123 (65%), Gaps = 9/123 (7%)
Query: 72 KETILLDGCDFEHWLVVMDXXXXXXXXXXXTRDEIIDGYIKTLAQIVGSEDEARHKIYSV 131
+ETILL GCD+ HWL+VM+ TR+++ID Y+ TLA ++GS +EA+ +Y+
Sbjct: 73 RETILLPGCDYNHWLIVMEFPKDPAP----TREQMIDTYLNTLATVLGSMEEAKKNMYAF 128
Query: 132 STRHYFAFGALVSEELSYKLKELPKVRWVLPDSYLDVRNKDYGGEPFINGEAVP-----Y 186
ST Y F V EE S K K LP V WVLPDSY+DV+NKDYGG+ +INGE +P Y
Sbjct: 129 STTTYTGFQCTVDEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYINGEIIPCTYPTY 188
Query: 187 DPK 189
PK
Sbjct: 189 QPK 191
>Os06g0116600 Proteinase inhibitor, propeptide domain containing protein
Length = 165
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 79/120 (65%), Gaps = 4/120 (3%)
Query: 70 PPKETILLDGCDFEHWLVVMDXXXXXXXXXXXTRDEIIDGYIKTLAQIVGSEDEARHKIY 129
P + L GCD+EHWL+VMD T+ ++ID YI+TLA+++GSE+EA+ KIY
Sbjct: 18 PTEMAPLFPGCDYEHWLIVMDKPGGEGA----TKQQMIDCYIQTLAKVLGSEEEAKKKIY 73
Query: 130 SVSTRHYFAFGALVSEELSYKLKELPKVRWVLPDSYLDVRNKDYGGEPFINGEAVPYDPK 189
+VS YF FG + EE S KL+ LP V +VLPDSY+D KDYG E F+NGE V P+
Sbjct: 74 NVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPEYKDYGAELFVNGEIVQRSPE 133
>Os11g0216400 Proteinase inhibitor, propeptide domain containing protein
Length = 374
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 77/119 (64%), Gaps = 5/119 (4%)
Query: 73 ETILLDGCDFEHWLVVMDXXXXXXXXXXXTRDEIIDGYIKTLAQIVGSEDEARHKIYSVS 132
+ IL +GCD+ HWL+ M+ TR+E+I+ Y++TLA++VGS +EA+ ++Y+ S
Sbjct: 82 DEILFEGCDYNHWLITMEFPDPKP-----TREEMIETYLQTLAKVVGSYEEAKKRMYAFS 136
Query: 133 TRHYFAFGALVSEELSYKLKELPKVRWVLPDSYLDVRNKDYGGEPFINGEAVPYDPKYH 191
T Y F A+++EE+S K + LP V ++LPDSYL K+YGG+ + NG P P H
Sbjct: 137 TTTYVGFQAVMTEEMSEKFRGLPGVVFILPDSYLYPETKEYGGDKYENGVITPRPPPVH 195
>Os04g0601800 Similar to Plastid protein
Length = 92
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 37/55 (67%)
Query: 135 HYFAFGALVSEELSYKLKELPKVRWVLPDSYLDVRNKDYGGEPFINGEAVPYDPK 189
YF FG + EE S KL+ LP V +VLPDSY+D NKDYG E F+NGE V P+
Sbjct: 3 RYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDAENKDYGAELFVNGEIVQRSPE 57
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,183,962
Number of extensions: 286650
Number of successful extensions: 694
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 675
Number of HSP's successfully gapped: 7
Length of query: 398
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 295
Effective length of database: 11,657,759
Effective search space: 3439038905
Effective search space used: 3439038905
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)