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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0601800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Plastid protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13 (0.026) R2 : 0.894
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.49 (0.0819) R2dC : 0.334 R2C : 0.637
β3 : 2.53 (0.102) R2dE : 0.227 R2E : 0.538
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.359 (0.0551) R2dN8 : 0.0166 R2N8 : 0.0286
σ : 0.486
deviance : 108.87
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_____
C
peak time of C : 16.7
E
wheather : wind
threshold : 8.575
memory length : 205
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.78
open length of G : 20.8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
93.93 0.455 13 0.533 2.49 2.52 -1.81 0.416 -0.365 16.6 8.451 216 6.7 20.7
94.1 0.452 13 0.56 2.48 2.54 -1.65 -- -0.364 16.6 8.572 214 6.71 20.7
99.75 0.465 13 0.566 2.51 2.6 -- -0.217 -0.336 16.6 9.424 207 6.75 20.8
100.05 0.466 13 0.599 2.48 2.56 -- -- -0.339 16.6 9.48 206 6.76 20.8
239.16 0.72 13 0.831 -- 3.95 -- 0.0629 -0.287 -- 10.2 252 6.83 19.3
218.69 0.693 13.1 0.578 3.81 -- -1.55 -- -0.548 17.3 -- -- -- --
224.69 0.702 13.1 0.579 3.8 -- -- -- -0.555 17.3 -- -- -- --
180.21 0.625 13 0.386 -- 3.74 -- -- -0.424 -- 58.7 372 6.38 17
108.87 0.486 13 -- 2.49 2.53 -- -- -0.359 16.7 8.575 205 6.78 20.8
979.88 1.46 13 0.448 -- -- -- -- -0.65 -- -- -- -- --
233.53 0.715 13.1 -- 3.79 -- -- -- -0.619 17.3 -- -- -- --
179.01 0.623 13 -- -- 3.84 -- -- -0.524 -- 160.4 411 6.23 16.2
985.17 1.47 13 -- -- -- -- -- -0.699 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 101.59 wind 9.0 270 < th dose independent rect. 6 21
2 101.64 precipitation 0.1 270 < th dose independent rect. 6 21
3 101.64 precipitation 0.1 270 < th dose dependent rect. 6 21
4 103.01 radiation 30.0 270 < th dose dependent rect. 3 3
7 103.11 wind 9.0 270 < th dose independent rect. 3 3
8 103.11 temperature 10.0 270 > th dose independent rect. 3 3
10 103.11 temperature 30.0 270 < th dose independent rect. 3 3
11 103.11 humidity 50.0 270 > th dose independent rect. 3 3
14 103.11 atmosphere 995.0 270 > th dose independent rect. 3 3
15 103.11 atmosphere 1015.0 270 < th dose independent rect. 3 3
16 103.11 radiation 20.0 270 < th dose independent rect. 3 3
19 103.11 temperature 10.0 270 > th dose independent rect. 6 21
22 103.26 temperature 10.0 270 > th dose dependent rect. 3 3
25 104.55 precipitation 0.1 270 < th dose independent rect. 3 3
26 104.55 precipitation 0.1 270 < th dose dependent rect. 3 3
27 105.99 humidity 50.0 270 > th dose dependent rect. 3 3
30 106.73 temperature 10.0 10 > th dose dependent rect. 5 3
31 107.22 wind 9.0 90 < th dose independent rect. 8 20
34 107.77 radiation 10.0 270 < th dose independent rect. 2 5
35 107.90 precipitation 0.1 90 < th dose independent rect. 8 20
36 107.90 precipitation 0.1 90 < th dose dependent rect. 8 20
47 108.12 temperature 10.0 90 > th dose independent rect. 8 20
50 108.30 wind 9.0 270 < th dose dependent rect. 3 3
53 108.82 wind 9.0 10 < th dose independent rect. 8 21
65 109.88 atmosphere 1010.0 270 < th dose independent rect. 2 5
66 109.97 wind 7.0 10 < th dose independent rect. 5 3
68 109.97 temperature 10.0 10 > th dose independent rect. 5 3
70 109.97 temperature 30.0 10 < th dose independent rect. 5 3
71 109.97 humidity 50.0 10 > th dose independent rect. 5 3
73 109.97 atmosphere 995.0 10 > th dose independent rect. 5 3
74 109.97 atmosphere 1015.0 10 < th dose independent rect. 5 3
75 109.97 temperature 10.0 10 > th dose independent rect. 8 21
79 110.27 radiation 40.0 10 < th dose independent rect. 5 3
80 110.30 precipitation 0.1 10 < th dose independent rect. 5 3
81 110.30 precipitation 0.1 10 < th dose dependent rect. 5 3
83 110.57 precipitation 0.1 10 < th dose independent rect. 8 21
84 110.57 precipitation 0.1 10 < th dose dependent rect. 8 21
86 110.61 humidity 70.0 270 > th dose independent rect. 2 5
88 110.63 wind 9.0 270 < th dose independent rect. 2 5
89 110.63 temperature 10.0 270 > th dose independent rect. 2 5
91 110.63 temperature 30.0 270 < th dose independent rect. 2 5
92 110.63 humidity 50.0 270 > th dose independent rect. 2 5
94 110.63 atmosphere 995.0 270 > th dose independent rect. 2 5
103 111.78 precipitation 0.1 270 < th dose independent rect. 2 5
104 111.78 precipitation 0.1 270 < th dose dependent rect. 2 5
112 112.42 atmosphere 995.0 90 > th dose dependent rect. 4 4
117 112.92 atmosphere 995.0 10 > th dose dependent rect. 5 3
124 113.21 wind 9.0 10 < th dose dependent rect. 5 3
134 113.31 temperature 10.0 270 > th dose dependent rect. 2 5
137 113.36 humidity 50.0 270 > th dose dependent rect. 2 5
165 114.96 atmosphere 995.0 90 > th dose independent rect. 8 20
180 115.65 atmosphere 995.0 10 > th dose independent rect. 8 21
217 116.23 radiation 1.0 270 < th dose independent rect. 3 10
250 117.66 wind 9.0 270 < th dose dependent rect. 2 5
265 117.81 radiation 1.0 270 < th dose dependent rect. 3 10
278 118.24 wind 1.0 270 > th dose independent rect. 3 3
325 118.89 humidity 50.0 10 > th dose dependent rect. 5 3
331 119.00 atmosphere 995.0 270 > th dose independent rect. 6 21
335 119.11 wind 1.0 270 > th dose independent rect. 7 19
346 119.43 radiation 40.0 10 < th dose dependent rect. 5 3
392 120.34 radiation 1.0 10 > th dose independent rect. 5 3
552 122.82 wind 9.0 90 < th dose dependent rect. 8 20
557 122.93 wind 1.0 270 > th dose independent rect. 2 5
565 123.14 wind 9.0 1440 < th dose independent rect. 5 4
566 123.14 temperature 10.0 1440 > th dose independent rect. 5 4
569 123.14 humidity 50.0 1440 > th dose independent rect. 5 4
571 123.14 atmosphere 995.0 1440 > th dose independent rect. 5 4
572 123.14 atmosphere 1015.0 1440 < th dose independent rect. 5 4
573 123.14 temperature 10.0 1440 > th dose independent rect. 9 20
628 124.72 temperature 15.0 90 > th dose independent rect. 15 17
629 124.75 humidity 50.0 10 > th dose independent rect. 8 21
730 126.97 temperature 15.0 270 > th dose independent rect. 11 10
735 127.08 radiation 40.0 90 < th dose independent rect. 13 19
737 127.13 humidity 50.0 90 > th dose independent rect. 8 20
744 127.28 wind 1.0 270 > th dose independent rect. 6 21
786 127.92 temperature 15.0 10 > th dose independent rect. 15 17
796 128.23 atmosphere 1015.0 90 < th dose independent rect. 8 20
832 128.94 precipitation 0.1 90 < th dose independent rect. 8 7
834 128.94 precipitation 0.1 90 < th dose dependent rect. 8 7
838 129.06 wind 9.0 90 < th dose independent rect. 8 7
839 129.10 radiation 1.0 90 > th dose independent rect. 8 7
844 129.24 precipitation 0.1 270 < th dose independent rect. 21 14
845 129.24 precipitation 0.1 270 < th dose dependent rect. 21 14
846 129.25 wind 9.0 270 < th dose independent rect. 21 14
848 129.26 temperature 10.0 90 > th dose independent rect. 8 7
849 129.26 atmosphere 1015.0 90 < th dose independent rect. 8 7
852 129.26 atmosphere 1015.0 10 < th dose independent rect. 8 21
853 129.28 wind 1.0 10 > th dose independent rect. 5 3
862 129.45 radiation 40.0 90 < th dose independent rect. 15 17
892 129.90 atmosphere 995.0 90 > th dose independent rect. 8 7
893 129.94 atmosphere 1015.0 270 < th dose independent rect. 11 10
894 130.01 wind 1.0 90 > th dose independent rect. 5 3
895 130.04 temperature 10.0 270 > th dose dependent rect. 7 4
902 130.22 wind 9.0 90 < th dose independent rect. 15 17
903 130.23 humidity 50.0 270 > th dose independent rect. 21 14
905 130.24 temperature 10.0 270 > th dose independent rect. 21 14
906 130.24 atmosphere 995.0 270 > th dose independent rect. 21 14
957 131.31 atmosphere 995.0 90 > th dose independent rect. 15 17
980 131.76 wind 1.0 90 > th dose independent rect. 8 7
985 131.83 temperature 15.0 270 > th dose independent rect. 11 20
1000 131.96 radiation 1.0 10 > th dose independent rect. 8 7