Os09g0132600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0132600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.34 | 0.263 | 13.3 | 0.756 | 1.27 | -1.11 | -0.26 | -0.92 | 0.146 | 17.7 | 30.41 | 91 | -- | -- |
| 32.46 | 0.265 | 13.3 | 0.646 | 1.26 | -1.17 | -0.0876 | -- | 0.132 | 17.7 | 32.09 | 58 | -- | -- |
| 31.46 | 0.261 | 13.3 | 0.761 | 1.26 | -1.11 | -- | -0.878 | 0.139 | 17.7 | 30.3 | 99 | -- | -- |
| 32.22 | 0.264 | 13.3 | 0.636 | 1.26 | -1.09 | -- | -- | 0.122 | 17.6 | 30.74 | 114 | -- | -- |
| 91.26 | 0.445 | 13.3 | 0.483 | -- | -2.15 | -- | -0.866 | -0.0713 | -- | 31.44 | 250 | -- | -- |
| 47.78 | 0.324 | 13.2 | 0.873 | 1.56 | -- | 0.168 | -- | 0.31 | 17.1 | -- | -- | -- | -- |
| 47.85 | 0.324 | 13.2 | 0.873 | 1.57 | -- | -- | -- | 0.311 | 17.1 | -- | -- | -- | -- |
| 92.25 | 0.447 | 13.3 | 0.324 | -- | -2.24 | -- | -- | -0.0784 | -- | 32.2 | 241 | -- | -- |
| 40.82 | 0.298 | 13.3 | -- | 1.19 | -1.37 | -- | -- | -0.00616 | 17.8 | 30.3 | 123 | -- | -- |
| 176.33 | 0.62 | 13.2 | 0.818 | -- | -- | -- | -- | 0.272 | -- | -- | -- | -- | -- |
| 67.96 | 0.386 | 13.2 | -- | 1.55 | -- | -- | -- | 0.214 | 17.1 | -- | -- | -- | -- |
| 94.95 | 0.454 | 13.3 | -- | -- | -2.3 | -- | -- | -0.0965 | -- | 32.04 | 252 | -- | -- |
| 193.97 | 0.65 | 13.2 | -- | -- | -- | -- | -- | 0.181 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.91 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 2 | 27.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 19 | 29.15 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 20 | 29.17 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 24 | 29.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 54 | 29.89 | temperature | 15 | 90 | > th | dose dependent | sin | 4 | NA |
| 68 | 30.10 | temperature | 30 | 90 | < th | dose dependent | sin | 3 | NA |
| 75 | 30.21 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 202 | 31.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 211 | 31.28 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 225 | 31.37 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 235 | 31.41 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 250 | 31.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 275 | 31.64 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 277 | 31.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 300 | 31.78 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 303 | 31.81 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 331 | 31.92 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 366 | 32.06 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 397 | 32.22 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 21 |
| 414 | 32.32 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 496 | 32.65 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 497 | 32.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 527 | 32.77 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 533 | 32.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 636 | 33.14 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 20 |
| 798 | 33.69 | temperature | 25 | 270 | > th | dose independent | rect. | 16 | 23 |
| 902 | 33.93 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 934 | 34.05 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 17 |
| 951 | 34.09 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 23 |
| 961 | 34.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 17 |