BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0548200 Os08g0548200|AK102617
(272 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0548200 Similar to ER lumen protein retaining receptor... 532 e-151
AK108434 334 5e-92
Os09g0534200 ER lumen protein retaining receptor family pro... 169 1e-42
Os11g0473000 Similar to ER lumen protein retaining receptor... 119 2e-27
Os04g0376700 Similar to ER lumen protein retaining receptor... 116 1e-26
Os05g0529300 Similar to ER lumen protein retaining receptor... 89 4e-18
>Os08g0548200 Similar to ER lumen protein retaining receptor-like protein
Length = 272
Score = 532 bits (1371), Expect = e-151, Method: Compositional matrix adjust.
Identities = 262/272 (96%), Positives = 262/272 (96%)
Query: 1 MRGSRRPVAVVLSWVRRQPPKVKAFLAVVAGMAALVFIRFIVHDHDNLFVAAEAAHALGL 60
MRGSRRPVAVVLSWVRRQPPKVKAFLAVVAGMAALVFIRFIVHDHDNLFVAAEAAHALGL
Sbjct: 1 MRGSRRPVAVVLSWVRRQPPKVKAFLAVVAGMAALVFIRFIVHDHDNLFVAAEAAHALGL 60
Query: 61 GVLIYKLTKEKTCAGLSLKSQDLTALFLAVRLYCSFVMEYDIHTIXXXXXXXXXXFVIYM 120
GVLIYKLTKEKTCAGLSLKSQDLTALFLAVRLYCSFVMEYDIHTI FVIYM
Sbjct: 61 GVLIYKLTKEKTCAGLSLKSQDLTALFLAVRLYCSFVMEYDIHTILDTATLAATLFVIYM 120
Query: 121 IRFKLRSTYMLDKDNFALYYVVLPCAGLALLVHPSTSHNIINRISWAFCVYLEAVSVLPQ 180
IRFKLRSTYMLDKDNFALYYVVLPCAGLALLVHPSTSHNIINRISWAFCVYLEAVSVLPQ
Sbjct: 121 IRFKLRSTYMLDKDNFALYYVVLPCAGLALLVHPSTSHNIINRISWAFCVYLEAVSVLPQ 180
Query: 181 LRLMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDTRGRLLTALGYGLWPSMVLLSE 240
LRLMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDTRGRLLTALGYGLWPSMVLLSE
Sbjct: 181 LRLMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDTRGRLLTALGYGLWPSMVLLSE 240
Query: 241 IVQTFILADFCYYYVKSVFGGQLVLRLPSGVV 272
IVQTFILADFCYYYVKSVFGGQLVLRLPSGVV
Sbjct: 241 IVQTFILADFCYYYVKSVFGGQLVLRLPSGVV 272
>AK108434
Length = 198
Score = 334 bits (856), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 161/182 (88%), Positives = 167/182 (91%)
Query: 91 RLYCSFVMEYDIHTIXXXXXXXXXXFVIYMIRFKLRSTYMLDKDNFALYYVVLPCAGLAL 150
R CSFVMEYDIHT+ FVIYMIRFKLR TYM+DKDNFALYYVV+PCA LAL
Sbjct: 17 RHACSFVMEYDIHTVLDTATLAATLFVIYMIRFKLRPTYMVDKDNFALYYVVVPCAVLAL 76
Query: 151 LVHPSTSHNIINRISWAFCVYLEAVSVLPQLRLMQNTKIVEPFTAHYVFALGVARFLSCA 210
L+HPSTSHNI+NRISWAFCVYLEAVSVLPQLRLMQNTKIVEPFTAHYVFALGVARFLSCA
Sbjct: 77 LIHPSTSHNIVNRISWAFCVYLEAVSVLPQLRLMQNTKIVEPFTAHYVFALGVARFLSCA 136
Query: 211 HWVLQVLDTRGRLLTALGYGLWPSMVLLSEIVQTFILADFCYYYVKSVFGGQLVLRLPSG 270
HWVLQVLDTRGRLLTALGYGLWPSMVLLSEIVQTFILADFCYYYVKS+ GGQLVLRLPSG
Sbjct: 137 HWVLQVLDTRGRLLTALGYGLWPSMVLLSEIVQTFILADFCYYYVKSLVGGQLVLRLPSG 196
Query: 271 VV 272
VV
Sbjct: 197 VV 198
>Os09g0534200 ER lumen protein retaining receptor family protein
Length = 104
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/85 (96%), Positives = 84/85 (98%)
Query: 188 KIVEPFTAHYVFALGVARFLSCAHWVLQVLDTRGRLLTALGYGLWPSMVLLSEIVQTFIL 247
+IVEPFTAHYVFALGVARFLSCAHWVLQVLDTRGRLLTALGYGLWPSMVLLSEIVQTFIL
Sbjct: 20 QIVEPFTAHYVFALGVARFLSCAHWVLQVLDTRGRLLTALGYGLWPSMVLLSEIVQTFIL 79
Query: 248 ADFCYYYVKSVFGGQLVLRLPSGVV 272
ADFCYYYVKS+ GGQLVLRLPSGVV
Sbjct: 80 ADFCYYYVKSLVGGQLVLRLPSGVV 104
>Os11g0473000 Similar to ER lumen protein retaining receptor (HDEL receptor)
(PGP169-12)
Length = 215
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 121/224 (54%), Gaps = 18/224 (8%)
Query: 50 VAAEAAHALGLGVLIYKLTKEKTCAGLSLKSQDLTALFLAVR---LYCSFVMEYDIHTIX 106
+A + H L + VL+ K+ K+CAG+SLK+Q+L AL A R L+ F+ Y+ +
Sbjct: 6 LAGDMTHLLSVVVLLLKIHTIKSCAGISLKTQELYALVFAARYLDLFIHFISLYNT-VMK 64
Query: 107 XXXXXXXXXFVIYMIRFKL-RSTYMLDKDNFALYYVVLPCAGLALLVHPSTSHNIINRIS 165
V YM R K+ R TY D D F +++VLPC LALL++ + +
Sbjct: 65 LVFLASSFSIVWYMRRHKIVRRTYDKDHDTFRHHFLVLPCLALALLINERFT---FREVM 121
Query: 166 WAFCVYLEAVSVLPQLRLMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDTRGRLLT 225
WAF +YLEAV++LPQL L+Q T+ ++ T YVF LG R L +W+ R T
Sbjct: 122 WAFSIYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRVLYILNWIY-------RYFT 174
Query: 226 ALGYGLWPSMVLLSEIVQTFILADFCYYYVKSVFGGQLVLRLPS 269
+ W S V + IVQT + ADF YYY+ S + + L LP+
Sbjct: 175 EPHFVHWISWV--AGIVQTLLYADFFYYYIMS-WKNNVKLELPA 215
>Os04g0376700 Similar to ER lumen protein retaining receptor (HDEL receptor)
(PGP169-12)
Length = 215
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 116/224 (51%), Gaps = 18/224 (8%)
Query: 50 VAAEAAHALGLGVLIYKLTKEKTCAGLSLKSQDLTALFLAVR---LYCSFVMEYDIHTIX 106
+A + H + + VL+ K+ K+CAG+SLK+Q+L AL A R ++ F+ Y+ +
Sbjct: 6 LAGDMTHIMSVLVLLLKIHTIKSCAGVSLKTQELYALVFATRYLDIFTDFISLYNT-VMK 64
Query: 107 XXXXXXXXXFVIYMIRFKL-RSTYMLDKDNFALYYVVLPCAGLALLVHPSTSHNIINRIS 165
V Y+ R K+ R +Y D D F ++VLPC LALL+H + +
Sbjct: 65 MIFLGSSFSIVWYIRRHKMVRRSYDKDHDTFRHQFLVLPCFLLALLIHEKFT---FREVM 121
Query: 166 WAFCVYLEAVSVLPQLRLMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDTRGRLLT 225
W F +YLEAV++LPQL L+Q T+ V+ T YVF LG R L +W R T
Sbjct: 122 WTFSIYLEAVAILPQLVLLQRTRNVDNLTGQYVFFLGAYRALYILNWAY-------RYFT 174
Query: 226 ALGYGLWPSMVLLSEIVQTFILADFCYYYVKSVFGGQLVLRLPS 269
Y W + + S VQT + ADF YYY+ S+ + L LP
Sbjct: 175 EPHYVHWITWI--SGFVQTLLYADFFYYYLNSL-KNNVKLTLPD 215
>Os05g0529300 Similar to ER lumen protein retaining receptor (HDEL receptor)
Length = 215
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 112/225 (49%), Gaps = 24/225 (10%)
Query: 52 AEAAHALGLGVLIYKLTKEKTCAGLSLKSQDLTALFLAVR---LYCSFVMEYDIHTIXXX 108
+ H + VL+ K+ K+C+G+S K+Q+L L R L+ ++ Y+ ++
Sbjct: 8 GDMTHLFSVLVLLLKIYATKSCSGVSRKTQELYMLVFVARYMDLFTDYISLYN--SVMKV 65
Query: 109 XXXXXXXFVIYMIRF--KLRSTYMLDKDNFALYYVVLPCAG--LALLVHPSTSHNIINRI 164
+++ +R ++R TY D+D F +VVL A LALL + + I
Sbjct: 66 VFITSSAAIVWCMRRHPQVRRTYDKDQDTFR--HVVLVAAAFVLALLFNERFT---FREI 120
Query: 165 SWAFCVYLEAVSVLPQLRLMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDTRGRLL 224
WAF +YLEAV++LPQL L+Q ++ V+ T YVF LG R +W+ R
Sbjct: 121 CWAFSIYLEAVAILPQLVLLQRSRNVDNLTGQYVFFLGAYRAFYILNWIY-------RYF 173
Query: 225 TALGYGLWPSMVLLSEIVQTFILADFCYYYVKSVFGGQLVLRLPS 269
T + W + + +VQT + ADF YYY S + + L LP+
Sbjct: 174 TEGHHSRWIPWI--AGLVQTALYADFFYYYFLS-WKNNVKLELPA 215
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.332 0.142 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,974,376
Number of extensions: 271406
Number of successful extensions: 756
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 747
Number of HSP's successfully gapped: 6
Length of query: 272
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 173
Effective length of database: 11,866,615
Effective search space: 2052924395
Effective search space used: 2052924395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 155 (64.3 bits)