FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0376700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to ER lumen protein retaining receptor (HDEL receptor) (PGP169-12).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0328) R2 : 0.203
β1 : -0.0123 (0.122) R2dD : 2.34e-05 R2D : 0.000118
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.03 (0.38) R2dE : 0.119 R2E : 0.0539
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 23.5 (2.68) R2dD*E : 0.148 R2D*E : 0.0814
γ1 : -0.0583 (0.0701) R2dN8 : 0.00163 R2N8 : 0.00146
σ : 0.613
deviance : 173.35
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 0.7647
memory length : 123
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.15
open length of G : 2.12

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
169.98 0.613 3.06 -0.0461 0.206 2.86 -0.65 23.8 -0.0727 2.89 0.745 126 2.14 2.1
198.66 0.656 3.05 -0.253 0.214 1.91 -0.289 -- -0.0818 2.19 0.7078 120 2.13 2.2
171.28 0.61 3.06 -0.0345 0.202 2.89 -- 23.5 -0.0685 2.38 0.7535 125 2.15 2.1
198.87 0.657 3.06 -0.228 0.216 1.96 -- -- -0.0733 2.54 0.7246 120 2.13 2.2
173.35 0.613 3.05 -0.0123 -- 3.03 -- 23.5 -0.0583 -- 0.7647 123 2.15 2.12
209.76 0.679 3.06 -0.237 0.326 -- -0.257 -- -0.0973 3.19 -- -- -- --
209.97 0.679 3.06 -0.232 0.325 -- -- -- -0.0958 3.25 -- -- -- --
200.26 0.659 3.06 -0.226 -- 1.98 -- -- -0.0716 -- 0.9258 122 2.15 2.27
200.26 0.659 3.05 -- 0.207 1.97 -- -- -0.0442 2.51 0.7377 120 2.13 2.18
215.95 0.687 3.06 -0.218 -- -- -- -- -0.0873 -- -- -- -- --
211.38 0.68 3.05 -- 0.32 -- -- -- -0.07 3.25 -- -- -- --
201.54 0.661 3.05 -- -- 2.06 -- -- -0.0456 -- 0.9028 121 2.17 2.2
217.2 0.688 3.05 -- -- -- -- -- -0.0631 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 176.29 wind 1.0 90 < th dose dependent rect. 2 1
2 177.25 wind 1.0 90 < th dose independent rect. 2 2
7 186.84 atmosphere 1000.0 10 < th dose independent rect. 3 1
14 186.84 atmosphere 1000.0 10 < th dose dependent rect. 3 1
45 194.67 radiation 10.0 10 < th dose dependent rect. 12 1
47 194.77 radiation 10.0 10 < th dose independent rect. 11 1
118 197.42 temperature 20.0 30 < th dose dependent rect. 2 9
136 197.63 temperature 20.0 10 < th dose independent rect. 2 9
226 199.83 atmosphere 1010.0 90 < th dose dependent rect. 2 7
237 199.95 temperature 20.0 10 > th dose independent rect. 3 19
238 199.99 temperature 20.0 270 < th dose dependent rect. 2 1
244 200.09 atmosphere 1010.0 10 < th dose dependent rect. 2 6
262 200.25 atmosphere 1000.0 10 < th dose independent rect. 3 9
296 200.47 temperature 20.0 270 < th dose independent rect. 2 1
300 200.49 wind 1.0 4320 < th dose independent rect. 2 1
308 200.56 temperature 20.0 30 < th dose independent rect. 3 4
316 200.60 wind 1.0 4320 > th dose independent rect. 2 1
345 200.91 temperature 25.0 720 > th dose independent rect. 16 6
350 200.94 atmosphere 1010.0 270 < th dose dependent rect. 24 7
355 200.98 humidity 70.0 4320 > th dose independent rect. 19 13
360 201.00 temperature 20.0 270 > th dose independent rect. 24 21
388 201.14 wind 1.0 1440 < th dose dependent rect. 2 4
396 201.19 temperature 30.0 270 < th dose dependent rect. 21 2
400 201.22 temperature 30.0 90 < th dose dependent rect. 21 5
404 201.24 temperature 20.0 270 > th dose independent rect. 24 19
411 201.27 temperature 20.0 270 > th dose independent rect. 3 1
413 201.27 temperature 20.0 10 < th dose independent rect. 3 12
417 201.29 temperature 25.0 720 < th dose independent rect. 16 8
430 201.32 humidity 70.0 4320 < th dose independent rect. 19 13
447 201.40 temperature 20.0 90 > th dose independent rect. 2 3
462 201.47 humidity 70.0 4320 > th dose independent rect. 19 1
473 201.52 wind 1.0 4320 < th dose dependent rect. 2 1
495 201.64 temperature 10.0 720 > th dose dependent rect. 16 7
529 201.77 humidity 70.0 4320 > th dose independent rect. 19 9
533 201.78 temperature 10.0 720 > th dose dependent rect. 16 5
540 201.80 humidity 70.0 4320 > th dose independent rect. 19 6
549 201.82 atmosphere 1000.0 270 < th dose independent rect. 23 10
550 201.82 temperature 20.0 10 < th dose independent rect. 3 15
557 201.83 temperature 30.0 720 < th dose dependent rect. 17 7
565 201.86 wind 1.0 90 < th dose independent rect. 2 7
574 201.87 humidity 70.0 4320 < th dose dependent rect. 18 14
620 201.98 temperature 20.0 10 < th dose independent sin 4 NA
628 201.99 humidity 70.0 4320 < th dose independent rect. 18 2
632 202.00 radiation 20.0 43200 < th dose independent rect. 4 2
667 202.06 temperature 20.0 10 < th dose independent rect. 2 20
707 202.13 temperature 20.0 90 > th dose dependent rect. 2 3
710 202.13 temperature 20.0 720 > th dose dependent rect. 16 11
716 202.15 humidity 70.0 4320 < th dose dependent rect. 18 2
727 202.18 temperature 25.0 720 > th dose independent rect. 20 1
747 202.20 temperature 20.0 30 > th dose dependent rect. 3 1
757 202.23 wind 1.0 1440 < th dose independent rect. 3 3
759 202.23 humidity 90.0 4320 < th dose dependent rect. 18 1
764 202.24 humidity 60.0 4320 < th dose dependent rect. 16 4
806 202.30 temperature 30.0 4320 < th dose dependent rect. 17 1
808 202.31 precipitation 0.1 14400 > th dose independent rect. 20 6
810 202.31 radiation 10.0 30 < th dose independent rect. 2 11
812 202.31 temperature 15.0 4320 > th dose dependent rect. 17 1
840 202.36 wind 9.0 270 < th dose dependent rect. 24 10
853 202.38 precipitation 0.1 14400 < th dose independent rect. 20 6
855 202.38 temperature 20.0 270 < th dose dependent rect. 1 6
857 202.38 precipitation 0.1 14400 < th dose dependent rect. 20 6
864 202.39 precipitation 0.1 14400 > th dose dependent rect. 21 5
906 202.45 wind 5.0 90 < th dose dependent rect. 1 9
927 202.48 radiation 20.0 30 < th dose dependent rect. 2 21
932 202.49 wind 5.0 4320 < th dose dependent rect. 2 3
938 202.50 precipitation 0.1 14400 > th dose dependent rect. 20 7
960 202.52 atmosphere 1000.0 270 > th dose independent rect. 20 15