BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0376700 Os04g0376700|Os04g0376700
(215 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0376700 Similar to ER lumen protein retaining receptor... 416 e-117
Os11g0473000 Similar to ER lumen protein retaining receptor... 353 7e-98
Os05g0529300 Similar to ER lumen protein retaining receptor... 317 5e-87
Os08g0548200 Similar to ER lumen protein retaining receptor... 104 4e-23
AK108434 77 7e-15
>Os04g0376700 Similar to ER lumen protein retaining receptor (HDEL receptor)
(PGP169-12)
Length = 215
Score = 416 bits (1070), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/215 (94%), Positives = 204/215 (94%)
Query: 1 MNAFRLAGDMTHIMSVLVLLLKIHTIKSCAGVSLKTQELYALVFATRYLDIFTDFISLYN 60
MNAFRLAGDMTHIMSVLVLLLKIHTIKSCAGVSLKTQELYALVFATRYLDIFTDFISLYN
Sbjct: 1 MNAFRLAGDMTHIMSVLVLLLKIHTIKSCAGVSLKTQELYALVFATRYLDIFTDFISLYN 60
Query: 61 TVMKMIFLGSSFSIVWYIRRHKMVRRSYDKDHDTFRHQFXXXXXXXXXXXIHEKFTFREV 120
TVMKMIFLGSSFSIVWYIRRHKMVRRSYDKDHDTFRHQF IHEKFTFREV
Sbjct: 61 TVMKMIFLGSSFSIVWYIRRHKMVRRSYDKDHDTFRHQFLVLPCFLLALLIHEKFTFREV 120
Query: 121 MWTFSIYLEAVAILPQLVLLQRTRNVDNLTGQYVFFLGAYRALYILNWAYRYFTEPHYVH 180
MWTFSIYLEAVAILPQLVLLQRTRNVDNLTGQYVFFLGAYRALYILNWAYRYFTEPHYVH
Sbjct: 121 MWTFSIYLEAVAILPQLVLLQRTRNVDNLTGQYVFFLGAYRALYILNWAYRYFTEPHYVH 180
Query: 181 WITWISGFVQTLLYADFFYYYLNSLKNNVKLTLPD 215
WITWISGFVQTLLYADFFYYYLNSLKNNVKLTLPD
Sbjct: 181 WITWISGFVQTLLYADFFYYYLNSLKNNVKLTLPD 215
>Os11g0473000 Similar to ER lumen protein retaining receptor (HDEL receptor)
(PGP169-12)
Length = 215
Score = 353 bits (905), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 173/214 (80%), Positives = 191/214 (89%)
Query: 1 MNAFRLAGDMTHIMSVLVLLLKIHTIKSCAGVSLKTQELYALVFATRYLDIFTDFISLYN 60
MNAFRLAGDMTH++SV+VLLLKIHTIKSCAG+SLKTQELYALVFA RYLD+F FISLYN
Sbjct: 1 MNAFRLAGDMTHLLSVVVLLLKIHTIKSCAGISLKTQELYALVFAARYLDLFIHFISLYN 60
Query: 61 TVMKMIFLGSSFSIVWYIRRHKMVRRSYDKDHDTFRHQFXXXXXXXXXXXIHEKFTFREV 120
TVMK++FL SSFSIVWY+RRHK+VRR+YDKDHDTFRH F I+E+FTFREV
Sbjct: 61 TVMKLVFLASSFSIVWYMRRHKIVRRTYDKDHDTFRHHFLVLPCLALALLINERFTFREV 120
Query: 121 MWTFSIYLEAVAILPQLVLLQRTRNVDNLTGQYVFFLGAYRALYILNWAYRYFTEPHYVH 180
MW FSIYLEAVAILPQLVLLQRTRN+DNLTGQYVFFLGAYR LYILNW YRYFTEPH+VH
Sbjct: 121 MWAFSIYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRVLYILNWIYRYFTEPHFVH 180
Query: 181 WITWISGFVQTLLYADFFYYYLNSLKNNVKLTLP 214
WI+W++G VQTLLYADFFYYY+ S KNNVKL LP
Sbjct: 181 WISWVAGIVQTLLYADFFYYYIMSWKNNVKLELP 214
>Os05g0529300 Similar to ER lumen protein retaining receptor (HDEL receptor)
Length = 215
Score = 317 bits (811), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 152/214 (71%), Positives = 171/214 (79%)
Query: 1 MNAFRLAGDMTHIMSVLVLLLKIHTIKSCAGVSLKTQELYALVFATRYLDIFTDFISLYN 60
MNAFR GDMTH+ SVLVLLLKI+ KSC+GVS KTQELY LVF RY+D+FTD+ISLYN
Sbjct: 1 MNAFRFLGDMTHLFSVLVLLLKIYATKSCSGVSRKTQELYMLVFVARYMDLFTDYISLYN 60
Query: 61 TVMKMIFLGSSFSIVWYIRRHKMVRRSYDKDHDTFRHQFXXXXXXXXXXXIHEKFTFREV 120
+VMK++F+ SS +IVW +RRH VRR+YDKD DTFRH +E+FTFRE+
Sbjct: 61 SVMKVVFITSSAAIVWCMRRHPQVRRTYDKDQDTFRHVVLVAAAFVLALLFNERFTFREI 120
Query: 121 MWTFSIYLEAVAILPQLVLLQRTRNVDNLTGQYVFFLGAYRALYILNWAYRYFTEPHYVH 180
W FSIYLEAVAILPQLVLLQR+RNVDNLTGQYVFFLGAYRA YILNW YRYFTE H+
Sbjct: 121 CWAFSIYLEAVAILPQLVLLQRSRNVDNLTGQYVFFLGAYRAFYILNWIYRYFTEGHHSR 180
Query: 181 WITWISGFVQTLLYADFFYYYLNSLKNNVKLTLP 214
WI WI+G VQT LYADFFYYY S KNNVKL LP
Sbjct: 181 WIPWIAGLVQTALYADFFYYYFLSWKNNVKLELP 214
>Os08g0548200 Similar to ER lumen protein retaining receptor-like protein
Length = 272
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 112/225 (49%), Gaps = 20/225 (8%)
Query: 6 LAGDMTHIMSVLVLLLKIHTIKSCAGVSLKTQELYALVFATRYLDIFTDFISLYN--TVM 63
+A + H + + VL+ K+ K+CAG+SLK+Q+L AL A R ++ F+ Y+ T++
Sbjct: 50 VAAEAAHALGLGVLIYKLTKEKTCAGLSLKSQDLTALFLAVR---LYCSFVMEYDIHTIL 106
Query: 64 KMIFLGSSFSIVWYIRRHKMVRRSYDKDHDTFRHQFXXXXXXXXXXXIHEKFT---FREV 120
L ++ +++ IR +R +Y D D F + +H + +
Sbjct: 107 DTATLAATLFVIYMIRFK--LRSTYMLDKDNFALYYVVLPCAGLALLVHPSTSHNIINRI 164
Query: 121 MWTFSIYLEAVAILPQLVLLQRTRNVDNLTGQYVFFLGAYRALYILNWAY-------RYF 173
W F +YLEAV++LPQL L+Q T+ V+ T YVF LG R L +W R
Sbjct: 165 SWAFCVYLEAVSVLPQLRLMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDTRGRLL 224
Query: 174 TEPHYVHWITWI--SGFVQTLLYADFFYYYLNSL-KNNVKLTLPD 215
T Y W + + S VQT + ADF YYY+ S+ + L LP
Sbjct: 225 TALGYGLWPSMVLLSEIVQTFILADFCYYYVKSVFGGQLVLRLPS 269
>AK108434
Length = 198
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 79/169 (46%), Gaps = 15/169 (8%)
Query: 60 NTVMKMIFLGSSFSIVWYIRRHKMVRRSYDKDHDTFRHQFXXXXXXXXXXXIHEKFT--- 116
+TV+ L ++ +++ IR +R +Y D D F + IH +
Sbjct: 29 HTVLDTATLAATLFVIYMIRFK--LRPTYMVDKDNFALYYVVVPCAVLALLIHPSTSHNI 86
Query: 117 FREVMWTFSIYLEAVAILPQLVLLQRTRNVDNLTGQYVFFLGAYRALYILNWAY------ 170
+ W F +YLEAV++LPQL L+Q T+ V+ T YVF LG R L +W
Sbjct: 87 VNRISWAFCVYLEAVSVLPQLRLMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDTR 146
Query: 171 -RYFTEPHYVHWITWI--SGFVQTLLYADFFYYYLNSL-KNNVKLTLPD 215
R T Y W + + S VQT + ADF YYY+ SL + L LP
Sbjct: 147 GRLLTALGYGLWPSMVLLSEIVQTFILADFCYYYVKSLVGGQLVLRLPS 195
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.332 0.142 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,075,991
Number of extensions: 212514
Number of successful extensions: 498
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 495
Number of HSP's successfully gapped: 5
Length of query: 215
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 118
Effective length of database: 11,971,043
Effective search space: 1412583074
Effective search space used: 1412583074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 154 (63.9 bits)