Os11g0473000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ER lumen protein retaining receptor (HDEL receptor) (PGP169-12).
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Os11g0473000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ER lumen protein retaining receptor (HDEL receptor) (PGP169-12).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.25 | 0.346 | 10.2 | 1.04 | 0.19 | 0.901 | -0.308 | 1.38 | 0.239 | 12.8 | 1.236 | 5803 | -- | -- |
| 58.38 | 0.356 | 10.2 | 1.01 | 0.273 | 0.751 | -0.29 | -- | 0.272 | 12.8 | 1.631 | 5803 | -- | -- |
| 54.63 | 0.344 | 10.2 | 1.04 | 0.189 | 0.903 | -- | 1.4 | 0.239 | 12.4 | 1.18 | 5804 | -- | -- |
| 57.01 | 0.352 | 10.2 | 0.822 | 0.266 | 0.728 | -- | -- | 0.189 | 12.3 | 1.622 | 5794 | -- | -- |
| 55.78 | 0.348 | 10.2 | 0.992 | -- | 1.02 | -- | 1.43 | 0.23 | -- | 1.181 | 5906 | -- | -- |
| 65.37 | 0.379 | 10.1 | 0.948 | 0.213 | -- | -0.29 | -- | 0.349 | 12.5 | -- | -- | -- | -- |
| 65.71 | 0.38 | 10.1 | 0.936 | 0.214 | -- | -- | -- | 0.347 | 12.1 | -- | -- | -- | -- |
| 55.89 | 0.348 | 10.2 | 0.774 | -- | 0.812 | -- | -- | 0.177 | -- | 1.51 | 11853 | -- | -- |
| 58.27 | 0.356 | 10.2 | -- | 0.28 | 0.884 | -- | -- | 0.172 | 12.1 | 4.478e-05 | 42878 | -- | -- |
| 68.59 | 0.387 | 10.2 | 0.929 | -- | -- | -- | -- | 0.344 | -- | -- | -- | -- | -- |
| 88.81 | 0.441 | 10.2 | -- | 0.202 | -- | -- | -- | 0.242 | 11.9 | -- | -- | -- | -- |
| 60.67 | 0.363 | 10.2 | -- | -- | 0.778 | -- | -- | 0.159 | -- | 0.009394 | 43431 | -- | -- |
| 91.37 | 0.446 | 10.2 | -- | -- | -- | -- | -- | 0.24 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.61 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 2 | 52.63 | humidity | 90 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 6 | 52.71 | radiation | 30 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 9 | 52.77 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 11 | 52.77 | humidity | 90 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 20 | 52.77 | radiation | 20 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 24 | 52.80 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 27 | 52.84 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 10 |
| 28 | 52.84 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 38 | 52.90 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 46 | 52.91 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 57 | 52.94 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 6 |
| 72 | 52.98 | humidity | 90 | 43200 | > th | dose independent | rect. | 8 | 10 |
| 108 | 53.08 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 8 |
| 130 | 53.18 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 145 | 53.24 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 149 | 53.25 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 154 | 53.26 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 161 | 53.27 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 162 | 53.27 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 8 |
| 183 | 53.31 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 21 |
| 190 | 53.32 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 201 | 53.35 | humidity | 90 | 43200 | < th | dose independent | sin | 23 | NA |
| 220 | 53.38 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 234 | 53.40 | humidity | 90 | 43200 | > th | dose independent | sin | 22 | NA |
| 245 | 53.41 | radiation | 40 | 4320 | < th | dose independent | rect. | 14 | 19 |
| 287 | 53.47 | radiation | 1 | 4320 | > th | dose dependent | rect. | 17 | 13 |
| 290 | 53.48 | radiation | 1 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 344 | 53.54 | humidity | 90 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 345 | 53.54 | humidity | 90 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 366 | 53.56 | humidity | 80 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 413 | 53.61 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 418 | 53.61 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 7 |
| 484 | 53.66 | radiation | 1 | 14400 | > th | dose independent | rect. | 11 | 21 |
| 496 | 53.67 | radiation | 1 | 14400 | > th | dose independent | sin | 12 | NA |
| 535 | 53.70 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 11 |
| 548 | 53.70 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 550 | 53.70 | temperature | 25 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 557 | 53.71 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 559 | 53.71 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 11 |
| 564 | 53.71 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 15 |
| 568 | 53.71 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 621 | 53.71 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 627 | 53.72 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 679 | 53.74 | radiation | 1 | 14400 | > th | dose independent | sin | 1 | NA |
| 689 | 53.74 | radiation | 1 | 14400 | < th | dose independent | rect. | 11 | 21 |
| 696 | 53.75 | radiation | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 751 | 53.77 | radiation | 1 | 14400 | < th | dose independent | sin | 2 | NA |
| 765 | 53.77 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 17 |
| 787 | 53.77 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 23 |
| 799 | 53.78 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 800 | 53.78 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 804 | 53.78 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 15 |
| 829 | 53.78 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 830 | 53.78 | radiation | 1 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 837 | 53.78 | radiation | 30 | 4320 | > th | dose dependent | rect. | 14 | 19 |
| 839 | 53.79 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 888 | 53.80 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 961 | 53.82 | humidity | 80 | 43200 | > th | dose dependent | sin | 23 | NA |
| 980 | 53.83 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 986 | 53.83 | radiation | 30 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 989 | 53.84 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 990 | 53.84 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 17 | 1 |