BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0473000 Os11g0473000|AK065994
(215 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0473000 Similar to ER lumen protein retaining receptor... 397 e-111
Os04g0376700 Similar to ER lumen protein retaining receptor... 366 e-102
Os05g0529300 Similar to ER lumen protein retaining receptor... 331 2e-91
Os08g0548200 Similar to ER lumen protein retaining receptor... 112 2e-25
AK108434 81 6e-16
>Os11g0473000 Similar to ER lumen protein retaining receptor (HDEL receptor)
(PGP169-12)
Length = 215
Score = 397 bits (1019), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/215 (94%), Positives = 204/215 (94%)
Query: 1 MNAFRLAGDMTHLLSVVVLLLKIHTIKSCAGISLKTQELYALVFAARYLDLFIHFISLYN 60
MNAFRLAGDMTHLLSVVVLLLKIHTIKSCAGISLKTQELYALVFAARYLDLFIHFISLYN
Sbjct: 1 MNAFRLAGDMTHLLSVVVLLLKIHTIKSCAGISLKTQELYALVFAARYLDLFIHFISLYN 60
Query: 61 TVMKLVFLASSFSIVWYMRRHKIVRRTYDKDHDTFRHHFXXXXXXXXXXXINERFTFREV 120
TVMKLVFLASSFSIVWYMRRHKIVRRTYDKDHDTFRHHF INERFTFREV
Sbjct: 61 TVMKLVFLASSFSIVWYMRRHKIVRRTYDKDHDTFRHHFLVLPCLALALLINERFTFREV 120
Query: 121 MWAFSIYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRVLYILNWIYRYFTEPHFVH 180
MWAFSIYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRVLYILNWIYRYFTEPHFVH
Sbjct: 121 MWAFSIYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRVLYILNWIYRYFTEPHFVH 180
Query: 181 WISWVAGIVQTLLYADFFYYYIMSWKNNVKLELPA 215
WISWVAGIVQTLLYADFFYYYIMSWKNNVKLELPA
Sbjct: 181 WISWVAGIVQTLLYADFFYYYIMSWKNNVKLELPA 215
>Os04g0376700 Similar to ER lumen protein retaining receptor (HDEL receptor)
(PGP169-12)
Length = 215
Score = 366 bits (939), Expect = e-102, Method: Compositional matrix adjust.
Identities = 173/214 (80%), Positives = 191/214 (89%)
Query: 1 MNAFRLAGDMTHLLSVVVLLLKIHTIKSCAGISLKTQELYALVFAARYLDLFIHFISLYN 60
MNAFRLAGDMTH++SV+VLLLKIHTIKSCAG+SLKTQELYALVFA RYLD+F FISLYN
Sbjct: 1 MNAFRLAGDMTHIMSVLVLLLKIHTIKSCAGVSLKTQELYALVFATRYLDIFTDFISLYN 60
Query: 61 TVMKLVFLASSFSIVWYMRRHKIVRRTYDKDHDTFRHHFXXXXXXXXXXXINERFTFREV 120
TVMK++FL SSFSIVWY+RRHK+VRR+YDKDHDTFRH F I+E+FTFREV
Sbjct: 61 TVMKMIFLGSSFSIVWYIRRHKMVRRSYDKDHDTFRHQFLVLPCFLLALLIHEKFTFREV 120
Query: 121 MWAFSIYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRVLYILNWIYRYFTEPHFVH 180
MW FSIYLEAVAILPQLVLLQRTRN+DNLTGQYVFFLGAYR LYILNW YRYFTEPH+VH
Sbjct: 121 MWTFSIYLEAVAILPQLVLLQRTRNVDNLTGQYVFFLGAYRALYILNWAYRYFTEPHYVH 180
Query: 181 WISWVAGIVQTLLYADFFYYYIMSWKNNVKLELP 214
WI+W++G VQTLLYADFFYYY+ S KNNVKL LP
Sbjct: 181 WITWISGFVQTLLYADFFYYYLNSLKNNVKLTLP 214
>Os05g0529300 Similar to ER lumen protein retaining receptor (HDEL receptor)
Length = 215
Score = 331 bits (849), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 159/215 (73%), Positives = 175/215 (81%)
Query: 1 MNAFRLAGDMTHLLSVVVLLLKIHTIKSCAGISLKTQELYALVFAARYLDLFIHFISLYN 60
MNAFR GDMTHL SV+VLLLKI+ KSC+G+S KTQELY LVF ARY+DLF +ISLYN
Sbjct: 1 MNAFRFLGDMTHLFSVLVLLLKIYATKSCSGVSRKTQELYMLVFVARYMDLFTDYISLYN 60
Query: 61 TVMKLVFLASSFSIVWYMRRHKIVRRTYDKDHDTFRHHFXXXXXXXXXXXINERFTFREV 120
+VMK+VF+ SS +IVW MRRH VRRTYDKD DTFRH NERFTFRE+
Sbjct: 61 SVMKVVFITSSAAIVWCMRRHPQVRRTYDKDQDTFRHVVLVAAAFVLALLFNERFTFREI 120
Query: 121 MWAFSIYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRVLYILNWIYRYFTEPHFVH 180
WAFSIYLEAVAILPQLVLLQR+RN+DNLTGQYVFFLGAYR YILNWIYRYFTE H
Sbjct: 121 CWAFSIYLEAVAILPQLVLLQRSRNVDNLTGQYVFFLGAYRAFYILNWIYRYFTEGHHSR 180
Query: 181 WISWVAGIVQTLLYADFFYYYIMSWKNNVKLELPA 215
WI W+AG+VQT LYADFFYYY +SWKNNVKLELPA
Sbjct: 181 WIPWIAGLVQTALYADFFYYYFLSWKNNVKLELPA 215
>Os08g0548200 Similar to ER lumen protein retaining receptor-like protein
Length = 272
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 20/225 (8%)
Query: 6 LAGDMTHLLSVVVLLLKIHTIKSCAGISLKTQELYALVFAARYLDLFIHFISLYN--TVM 63
+A + H L + VL+ K+ K+CAG+SLK+Q+L AL A R L+ F+ Y+ T++
Sbjct: 50 VAAEAAHALGLGVLIYKLTKEKTCAGLSLKSQDLTALFLAVR---LYCSFVMEYDIHTIL 106
Query: 64 KLVFLASSFSIVWYMRRHKIVRRTYDKDHDTFRHHFXXXXXXXXXXXINERFT---FREV 120
LA++ ++ YM R K+ R TY D D F ++ ++ + +
Sbjct: 107 DTATLAATLFVI-YMIRFKL-RSTYMLDKDNFALYYVVLPCAGLALLVHPSTSHNIINRI 164
Query: 121 MWAFSIYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRVLYILNWIY-------RYF 173
WAF +YLEAV++LPQL L+Q T+ ++ T YVF LG R L +W+ R
Sbjct: 165 SWAFCVYLEAVSVLPQLRLMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDTRGRLL 224
Query: 174 TEPHFVHWISWV--AGIVQTLLYADFFYYYIMS-WKNNVKLELPA 215
T + W S V + IVQT + ADF YYY+ S + + L LP+
Sbjct: 225 TALGYGLWPSMVLLSEIVQTFILADFCYYYVKSVFGGQLVLRLPS 269
>AK108434
Length = 198
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 85/169 (50%), Gaps = 15/169 (8%)
Query: 60 NTVMKLVFLASSFSIVWYMRRHKIVRRTYDKDHDTFRHHFXXXXXXXXXXXINERFT--- 116
+TV+ LA++ ++ YM R K+ R TY D D F ++ I+ +
Sbjct: 29 HTVLDTATLAATLFVI-YMIRFKL-RPTYMVDKDNFALYYVVVPCAVLALLIHPSTSHNI 86
Query: 117 FREVMWAFSIYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRVLYILNWIY------ 170
+ WAF +YLEAV++LPQL L+Q T+ ++ T YVF LG R L +W+
Sbjct: 87 VNRISWAFCVYLEAVSVLPQLRLMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDTR 146
Query: 171 -RYFTEPHFVHWISWV--AGIVQTLLYADFFYYYIMSW-KNNVKLELPA 215
R T + W S V + IVQT + ADF YYY+ S + L LP+
Sbjct: 147 GRLLTALGYGLWPSMVLLSEIVQTFILADFCYYYVKSLVGGQLVLRLPS 195
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.334 0.143 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,261,758
Number of extensions: 214281
Number of successful extensions: 632
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 627
Number of HSP's successfully gapped: 5
Length of query: 215
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 118
Effective length of database: 11,971,043
Effective search space: 1412583074
Effective search space used: 1412583074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 154 (63.9 bits)