Os05g0529300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ER lumen protein retaining receptor (HDEL receptor).
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Os05g0529300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ER lumen protein retaining receptor (HDEL receptor).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10.71 | 0.154 | 11.2 | 0.421 | 0.309 | -0.254 | 0.0381 | 0.328 | 0.235 | 16.4 | 10.02 | 1349 | -- | -- |
| 10.95 | 0.154 | 11.2 | 0.409 | 0.306 | -0.248 | 0.0221 | -- | 0.236 | 16.5 | 10.16 | 1348 | -- | -- |
| 10.72 | 0.152 | 11.2 | 0.421 | 0.31 | -0.255 | -- | 0.325 | 0.234 | 16.5 | 10.01 | 1349 | -- | -- |
| 10.91 | 0.154 | 11.2 | 0.384 | 0.3 | -0.259 | -- | -- | 0.23 | 16.6 | 10.05 | 1336 | -- | -- |
| 15.83 | 0.185 | 11.2 | 0.404 | -- | -0.273 | -- | 0.334 | 0.237 | -- | 10.75 | 1347 | -- | -- |
| 12.51 | 0.166 | 11.2 | 0.296 | 0.323 | -- | 0.0638 | -- | 0.145 | 16 | -- | -- | -- | -- |
| 12.52 | 0.166 | 11.2 | 0.297 | 0.323 | -- | -- | -- | 0.146 | 16 | -- | -- | -- | -- |
| 15.93 | 0.186 | 11.2 | 0.376 | -- | -0.27 | -- | -- | 0.216 | -- | 10.7 | 1347 | -- | -- |
| 14.05 | 0.175 | 11.2 | -- | 0.354 | -0.178 | -- | -- | 0.148 | 16 | 29.95 | 1788 | -- | -- |
| 18.22 | 0.199 | 11.2 | 0.283 | -- | -- | -- | -- | 0.137 | -- | -- | -- | -- | -- |
| 14.84 | 0.18 | 11.2 | -- | 0.317 | -- | -- | -- | 0.113 | 16 | -- | -- | -- | -- |
| 18.54 | 0.201 | 11.2 | -- | -- | -0.211 | -- | -- | 0.156 | -- | 8.74 | 1331 | -- | -- |
| 20.34 | 0.21 | 11.2 | -- | -- | -- | -- | -- | 0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.55 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 22 |
| 2 | 10.56 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 3 | 10.62 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 4 | 10.62 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 5 | 10.62 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 8 |
| 7 | 10.63 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 25 | 10.65 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 12 |
| 26 | 10.65 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 15 |
| 30 | 10.66 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 104 | 10.70 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 13 |
| 134 | 10.72 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 3 | 2 |
| 138 | 10.72 | radiation | 10 | 1440 | < th | dose dependent | sin | 18 | NA |
| 142 | 10.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 194 | 10.74 | radiation | 10 | 1440 | > th | dose independent | sin | 20 | NA |
| 195 | 10.74 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 250 | 10.75 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 266 | 10.75 | temperature | 25 | 1440 | > th | dose dependent | sin | 15 | NA |
| 269 | 10.75 | radiation | 1 | 1440 | < th | dose dependent | sin | 21 | NA |
| 323 | 10.76 | radiation | 20 | 1440 | < th | dose dependent | rect. | 12 | 3 |
| 357 | 10.77 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 8 |
| 461 | 10.79 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 485 | 10.80 | humidity | 90 | 43200 | < th | dose independent | rect. | 1 | 2 |
| 492 | 10.80 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 547 | 10.81 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 575 | 10.82 | radiation | 1 | 1440 | < th | dose independent | sin | 19 | NA |
| 577 | 10.82 | wind | 3 | 90 | < th | dose independent | rect. | 3 | 2 |
| 595 | 10.82 | humidity | 80 | 43200 | > th | dose dependent | rect. | 19 | 7 |
| 614 | 10.83 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 632 | 10.83 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 658 | 10.83 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 22 |
| 660 | 10.83 | temperature | 25 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 707 | 10.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 4 | 20 |
| 710 | 10.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 20 |
| 713 | 10.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 21 |
| 735 | 10.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 741 | 10.85 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 742 | 10.85 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 749 | 10.85 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 817 | 10.85 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 5 | 23 |
| 849 | 10.85 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 18 |
| 875 | 10.86 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 902 | 10.86 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 909 | 10.86 | temperature | 10 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 910 | 10.86 | humidity | 80 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 927 | 10.86 | temperature | 25 | 1440 | > th | dose dependent | rect. | 3 | 15 |
| 972 | 10.87 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |