BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0473000 Os11g0473000|AK065994
(215 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G25040.1 | chr3:9124479-9126051 FORWARD LENGTH=216 347 4e-96
AT1G29330.1 | chr1:10258580-10260906 REVERSE LENGTH=216 323 5e-89
AT3G25160.1 | chr3:9160337-9162023 REVERSE LENGTH=273 107 5e-24
AT1G19970.1 | chr1:6931194-6932597 REVERSE LENGTH=273 107 5e-24
AT4G38790.1 | chr4:18111426-18112977 FORWARD LENGTH=274 104 3e-23
AT2G21190.1 | chr2:9080916-9082642 FORWARD LENGTH=270 102 2e-22
AT1G75760.1 | chr1:28446940-28448421 REVERSE LENGTH=273 102 2e-22
>AT3G25040.1 | chr3:9124479-9126051 FORWARD LENGTH=216
Length = 215
Score = 347 bits (889), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 166/215 (77%), Positives = 183/215 (85%)
Query: 1 MNAFRLAGDMTHLLSVVVLLLKIHTIKSCAGISLKTQELYALVFAARYLDLFIHFISLYN 60
MN FRLAGDMTHL SV+VLLLKIHTIKSCAG+SLKTQELYA+VFA RYLD+F F+SLYN
Sbjct: 1 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGVSLKTQELYAIVFATRYLDIFTSFVSLYN 60
Query: 61 TVMKLVFLASSFSIVWYMRRHKIVRRTYDKDHDTFRHHFXXXXXXXXXXXINERFTFREV 120
T MKLVFL SSFSIVWYM+ HK V RTYD++ DTFRH F I+E+FTF EV
Sbjct: 61 TSMKLVFLGSSFSIVWYMKYHKAVHRTYDREQDTFRHWFLVLPCFLLALLIHEKFTFLEV 120
Query: 121 MWAFSIYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRVLYILNWIYRYFTEPHFVH 180
+W S+YLEAVAILPQLVLLQRTRNIDNLTGQY+F LG YR LYILNWIYRYFTEPHFVH
Sbjct: 121 LWTSSLYLEAVAILPQLVLLQRTRNIDNLTGQYIFLLGGYRGLYILNWIYRYFTEPHFVH 180
Query: 181 WISWVAGIVQTLLYADFFYYYIMSWKNNVKLELPA 215
WI+W+AG VQTLLYADFFYYY +SWKNN KL+LPA
Sbjct: 181 WITWIAGFVQTLLYADFFYYYFLSWKNNKKLQLPA 215
>AT1G29330.1 | chr1:10258580-10260906 REVERSE LENGTH=216
Length = 215
Score = 323 bits (827), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 152/215 (70%), Positives = 178/215 (82%)
Query: 1 MNAFRLAGDMTHLLSVVVLLLKIHTIKSCAGISLKTQELYALVFAARYLDLFIHFISLYN 60
MN FR AGDM+HL+SV++LLLKI+ KSCAGISLKTQELYALVF RYLDLF ++SLYN
Sbjct: 1 MNIFRFAGDMSHLISVLILLLKIYATKSCAGISLKTQELYALVFLTRYLDLFTDYVSLYN 60
Query: 61 TVMKLVFLASSFSIVWYMRRHKIVRRTYDKDHDTFRHHFXXXXXXXXXXXINERFTFREV 120
++MK+VF+ASS +IVW MRRH +VRR+YDKD DTFRH + +NE+FT +EV
Sbjct: 61 SIMKIVFIASSLAIVWCMRRHPLVRRSYDKDLDTFRHQYVVLACFVLGLILNEKFTVQEV 120
Query: 121 MWAFSIYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRVLYILNWIYRYFTEPHFVH 180
WAFSIYLEAVAILPQLVLLQR+ N+DNLTGQYV FLGAYR LYI+NWIYRYFTE HF
Sbjct: 121 FWAFSIYLEAVAILPQLVLLQRSGNVDNLTGQYVVFLGAYRGLYIINWIYRYFTEDHFTR 180
Query: 181 WISWVAGIVQTLLYADFFYYYIMSWKNNVKLELPA 215
WI+ V+G+VQT LYADFFYYY +SWK N KL+LPA
Sbjct: 181 WIACVSGLVQTALYADFFYYYYISWKTNTKLKLPA 215
>AT3G25160.1 | chr3:9160337-9162023 REVERSE LENGTH=273
Length = 272
Score = 107 bits (267), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 124/230 (53%), Gaps = 23/230 (10%)
Query: 2 NAFRLAGDMTHLLSVVVLLLKIHTIKSCAGISLKTQELYALVFAARYLDLFIHFISLYNT 61
N F +A ++ H +++L+ K+ K+C+G+SLK+QE+ A+ A R I I++
Sbjct: 48 NHFFIASELIHAAGILILIYKLTRQKTCSGLSLKSQEVTAIFLAVR----LICSINMEGD 103
Query: 62 VMKLVFLASSFSIVW--YMRRHKIVRRTYDKDHDTFRHHFXXXXXXXXXXXINERFT--- 116
+ ++ A+ S +W YM R+K+ + +Y K DT +++ IN +
Sbjct: 104 IHTVLDFATLVSTLWVIYMIRYKL-KASYIKSLDTCYNYYVLVPSAILALIINPSTSYSY 162
Query: 117 FREVMWAFSIYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRVLYILNWIYRYF-TE 175
F ++WAF +Y E+V++LPQL L+Q + I+ T YVF LG R L +WI + T
Sbjct: 163 FHRILWAFCVYTESVSVLPQLRLMQNAQIIEPFTAHYVFALGIARFLACAHWIIQVVETR 222
Query: 176 PHFVHW----------ISWVAGIVQTLLYADFFYYYIMS-WKNNVKLELP 214
H++ W ++ +A IVQT + ADF YYY+ S + + L++P
Sbjct: 223 GHYL-WLLGAGYFWFPVALLAEIVQTFILADFCYYYVKSVMEGQLVLKMP 271
>AT1G19970.1 | chr1:6931194-6932597 REVERSE LENGTH=273
Length = 272
Score = 107 bits (266), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 113/223 (50%), Gaps = 16/223 (7%)
Query: 6 LAGDMTHLLSVVVLLLKIHTIKSCAGISLKTQELYALVFAARYLDLFIHFISLYNTVMKL 65
+A + H + + VL+ K+ K+CAGISLKTQEL AL A R F+ L+ T +
Sbjct: 50 VASEAVHAVGIAVLIYKLTKEKTCAGISLKTQELTALFLAVRLYCSFVMEFDLH-TFLDS 108
Query: 66 VFLASSFSIVWYMRRHKIVRRTYDKDHDTFRHHFXXXXXXXXXXXINER---FTFREVMW 122
L ++ +V YM R K+ R TY +D D F +F I+ + W
Sbjct: 109 ATLVTTLWVV-YMIRFKL-RPTYMEDKDNFAIYFVVIPCAVLSFFIHPSTRHHIINRISW 166
Query: 123 AFSIYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRVLYILNWIY-------RYFTE 175
AF +YLEAV++LPQL ++Q T+ ++ T YVF LG R L +WI R T
Sbjct: 167 AFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGIARFLSCAHWILQVLDTRGRLLTA 226
Query: 176 PHFVHW--ISWVAGIVQTLLYADFFYYYIMS-WKNNVKLELPA 215
W + ++ IVQT + ADF YYY+ S + L LP+
Sbjct: 227 LGSGLWPVMVLISEIVQTFILADFCYYYVQSLMGGQLVLRLPS 269
>AT4G38790.1 | chr4:18111426-18112977 FORWARD LENGTH=274
Length = 273
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 117/225 (52%), Gaps = 20/225 (8%)
Query: 6 LAGDMTHLLSVVVLLLKIHTIKSCAGISLKTQELYALVFAARYLDLFIHFISLYN--TVM 63
+A + H + + VL+ K+ K+CAG+SLK+QEL A+ A R L+ + Y+ T++
Sbjct: 51 VAAEAVHSIGICVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSIVMEYDIHTIL 107
Query: 64 KLVFLASSFSIVWYMRRHKIVRRTYDKDHDTFRHHFXXXXXXXXXXXINERFT---FREV 120
L L ++ ++ +M R K+ R +Y +D D F ++ I+ + +
Sbjct: 108 DLATLGTTLWVI-FMIRFKL-RASYMEDKDNFPLYYVLAPCVALAVFIHPSTSHNIINRI 165
Query: 121 MWAFSIYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRVLYILNWIY-------RYF 173
WA +YLEAV++LPQL ++Q T+ ++ T YVF LG R L +W+ R
Sbjct: 166 SWALCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVVDTRGRLL 225
Query: 174 TEPHFVHWISWV--AGIVQTLLYADFFYYYIMS-WKNNVKLELPA 215
+ W S V + IVQT + ADF YYY+ S + + L LP+
Sbjct: 226 VALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQLVLRLPS 270
>AT2G21190.1 | chr2:9080916-9082642 FORWARD LENGTH=270
Length = 269
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 20/225 (8%)
Query: 6 LAGDMTHLLSVVVLLLKIHTIKSCAGISLKTQELYALVFAARYLDLFIHFISLYN--TVM 63
+A + H + + VL+ K+ K+CAG+SLK+QEL A+ A R L+ F+ Y+ T++
Sbjct: 47 VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHTIL 103
Query: 64 KLVFLASSFSIVWYMRRHKIVRRTYDKDHDTFRHHFXXXXXXXXXXXINERFT---FREV 120
L L ++ +++ +R + ++ TY ++ D F ++ I+ + +
Sbjct: 104 DLATLGTTLWVIYMIRFN--LKTTYMEEKDNFALYYVLAPCVVLAVWIHPSTSHNILNRI 161
Query: 121 MWAFSIYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRVLYILNWIY-------RYF 173
W F +YLEAV++LPQL ++Q T+ ++ T YVF LG R +W+ R
Sbjct: 162 SWGFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFFSCAHWVLQMMDTHGRLL 221
Query: 174 TEPHFVHWISWV--AGIVQTLLYADFFYYYIMS-WKNNVKLELPA 215
+ W S V + IVQT + ADF YYY+ S + + L LP+
Sbjct: 222 VVLGYGLWPSMVIISEIVQTFILADFCYYYVKSVFGGQLVLRLPS 266
>AT1G75760.1 | chr1:28446940-28448421 REVERSE LENGTH=273
Length = 272
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 111/223 (49%), Gaps = 16/223 (7%)
Query: 6 LAGDMTHLLSVVVLLLKIHTIKSCAGISLKTQELYALVFAARYLDLFIHFISLYNTVMKL 65
+A + H L + VL+ K+ ++CAG+SLK+QEL AL A R F+ ++ +
Sbjct: 50 VAAEAVHSLGISVLIYKLTKERTCAGLSLKSQELTALFLAVRLYCSFVMEFDIHTLLDSA 109
Query: 66 VFLASSFSIVWYMRRHKIVRRTYDKDHDTFRHHFXXXXXXXXXXXINER---FTFREVMW 122
+ + F I YM R K+ + +Y D D F ++ I+ ++ W
Sbjct: 110 TLVTTLFVI--YMIRFKL-KASYMDDKDNFAIYYVVIPCVVLSVLIHPSTHHHIINKISW 166
Query: 123 AFSIYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRVLYILNWIY-------RYFTE 175
AF +YLEAV++LPQL ++Q T+ ++ T YVF LG R L +W+ R T
Sbjct: 167 AFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGIARFLSCAHWVLQVLDTRGRLLTA 226
Query: 176 PHFVHWISWV--AGIVQTLLYADFFYYYIMS-WKNNVKLELPA 215
+ W V + IVQT + ADF YYY+ S + L LP+
Sbjct: 227 LGYGFWPIMVLLSEIVQTFILADFCYYYVKSLMGGQLVLRLPS 269
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.334 0.143 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,260,329
Number of extensions: 155309
Number of successful extensions: 537
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 526
Number of HSP's successfully gapped: 7
Length of query: 215
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 121
Effective length of database: 8,529,465
Effective search space: 1032065265
Effective search space used: 1032065265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 109 (46.6 bits)