BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0376700 Os04g0376700|Os04g0376700
(215 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G25040.1 | chr3:9124479-9126051 FORWARD LENGTH=216 348 1e-96
AT1G29330.1 | chr1:10258580-10260906 REVERSE LENGTH=216 314 2e-86
AT4G38790.1 | chr4:18111426-18112977 FORWARD LENGTH=274 106 1e-23
AT1G19970.1 | chr1:6931194-6932597 REVERSE LENGTH=273 103 1e-22
AT2G21190.1 | chr2:9080916-9082642 FORWARD LENGTH=270 102 2e-22
AT1G75760.1 | chr1:28446940-28448421 REVERSE LENGTH=273 102 2e-22
AT3G25160.1 | chr3:9160337-9162023 REVERSE LENGTH=273 97 6e-21
>AT3G25040.1 | chr3:9124479-9126051 FORWARD LENGTH=216
Length = 215
Score = 348 bits (893), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 167/214 (78%), Positives = 183/214 (85%)
Query: 1 MNAFRLAGDMTHIMSVLVLLLKIHTIKSCAGVSLKTQELYALVFATRYLDIFTDFISLYN 60
MN FRLAGDMTH+ SVLVLLLKIHTIKSCAGVSLKTQELYA+VFATRYLDIFT F+SLYN
Sbjct: 1 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGVSLKTQELYAIVFATRYLDIFTSFVSLYN 60
Query: 61 TVMKMIFLGSSFSIVWYIRRHKMVRRSYDKDHDTFRHQFXXXXXXXXXXXIHEKFTFREV 120
T MK++FLGSSFSIVWY++ HK V R+YD++ DTFRH F IHEKFTF EV
Sbjct: 61 TSMKLVFLGSSFSIVWYMKYHKAVHRTYDREQDTFRHWFLVLPCFLLALLIHEKFTFLEV 120
Query: 121 MWTFSIYLEAVAILPQLVLLQRTRNVDNLTGQYVFFLGAYRALYILNWAYRYFTEPHYVH 180
+WT S+YLEAVAILPQLVLLQRTRN+DNLTGQY+F LG YR LYILNW YRYFTEPH+VH
Sbjct: 121 LWTSSLYLEAVAILPQLVLLQRTRNIDNLTGQYIFLLGGYRGLYILNWIYRYFTEPHFVH 180
Query: 181 WITWISGFVQTLLYADFFYYYLNSLKNNVKLTLP 214
WITWI+GFVQTLLYADFFYYY S KNN KL LP
Sbjct: 181 WITWIAGFVQTLLYADFFYYYFLSWKNNKKLQLP 214
>AT1G29330.1 | chr1:10258580-10260906 REVERSE LENGTH=216
Length = 215
Score = 314 bits (805), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 148/214 (69%), Positives = 173/214 (80%)
Query: 1 MNAFRLAGDMTHIMSVLVLLLKIHTIKSCAGVSLKTQELYALVFATRYLDIFTDFISLYN 60
MN FR AGDM+H++SVL+LLLKI+ KSCAG+SLKTQELYALVF TRYLD+FTD++SLYN
Sbjct: 1 MNIFRFAGDMSHLISVLILLLKIYATKSCAGISLKTQELYALVFLTRYLDLFTDYVSLYN 60
Query: 61 TVMKMIFLGSSFSIVWYIRRHKMVRRSYDKDHDTFRHQFXXXXXXXXXXXIHEKFTFREV 120
++MK++F+ SS +IVW +RRH +VRRSYDKD DTFRHQ+ ++EKFT +EV
Sbjct: 61 SIMKIVFIASSLAIVWCMRRHPLVRRSYDKDLDTFRHQYVVLACFVLGLILNEKFTVQEV 120
Query: 121 MWTFSIYLEAVAILPQLVLLQRTRNVDNLTGQYVFFLGAYRALYILNWAYRYFTEPHYVH 180
W FSIYLEAVAILPQLVLLQR+ NVDNLTGQYV FLGAYR LYI+NW YRYFTE H+
Sbjct: 121 FWAFSIYLEAVAILPQLVLLQRSGNVDNLTGQYVVFLGAYRGLYIINWIYRYFTEDHFTR 180
Query: 181 WITWISGFVQTLLYADFFYYYLNSLKNNVKLTLP 214
WI +SG VQT LYADFFYYY S K N KL LP
Sbjct: 181 WIACVSGLVQTALYADFFYYYYISWKTNTKLKLP 214
>AT4G38790.1 | chr4:18111426-18112977 FORWARD LENGTH=274
Length = 273
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 112/224 (50%), Gaps = 18/224 (8%)
Query: 6 LAGDMTHIMSVLVLLLKIHTIKSCAGVSLKTQELYALVFATR-YLDIFTDFISLYNTVMK 64
+A + H + + VL+ K+ K+CAG+SLK+QEL A+ A R Y I ++ +T++
Sbjct: 51 VAAEAVHSIGICVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSIVMEYD--IHTILD 108
Query: 65 MIFLGSSFSIVWYIRRHKMVRRSYDKDHDTFRHQFXXXXXXXXXXXIHEKFT---FREVM 121
+ LG++ +++ IR +R SY +D D F + IH + +
Sbjct: 109 LATLGTTLWVIFMIRFK--LRASYMEDKDNFPLYYVLAPCVALAVFIHPSTSHNIINRIS 166
Query: 122 WTFSIYLEAVAILPQLVLLQRTRNVDNLTGQYVFFLGAYRALYILNWAY-------RYFT 174
W +YLEAV++LPQL ++Q T+ V+ T YVF LG R L +W R
Sbjct: 167 WALCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVVDTRGRLLV 226
Query: 175 EPHYVHW--ITWISGFVQTLLYADFFYYYLNSL-KNNVKLTLPD 215
Y W + IS VQT + ADF YYY+ S+ + L LP
Sbjct: 227 ALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQLVLRLPS 270
>AT1G19970.1 | chr1:6931194-6932597 REVERSE LENGTH=273
Length = 272
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 110/225 (48%), Gaps = 20/225 (8%)
Query: 6 LAGDMTHIMSVLVLLLKIHTIKSCAGVSLKTQELYALVFATRYLDIFTDFISLYN--TVM 63
+A + H + + VL+ K+ K+CAG+SLKTQEL AL A R ++ F+ ++ T +
Sbjct: 50 VASEAVHAVGIAVLIYKLTKEKTCAGISLKTQELTALFLAVR---LYCSFVMEFDLHTFL 106
Query: 64 KMIFLGSSFSIVWYIRRHKMVRRSYDKDHDTFRHQFXXXXXXXXXXXIHEK---FTFREV 120
L ++ +V+ IR +R +Y +D D F F IH +
Sbjct: 107 DSATLVTTLWVVYMIRFK--LRPTYMEDKDNFAIYFVVIPCAVLSFFIHPSTRHHIINRI 164
Query: 121 MWTFSIYLEAVAILPQLVLLQRTRNVDNLTGQYVFFLGAYRALYILNWAY-------RYF 173
W F +YLEAV++LPQL ++Q T+ V+ T YVF LG R L +W R
Sbjct: 165 SWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGIARFLSCAHWILQVLDTRGRLL 224
Query: 174 TEPHYVHW--ITWISGFVQTLLYADFFYYYLNSL-KNNVKLTLPD 215
T W + IS VQT + ADF YYY+ SL + L LP
Sbjct: 225 TALGSGLWPVMVLISEIVQTFILADFCYYYVQSLMGGQLVLRLPS 269
>AT2G21190.1 | chr2:9080916-9082642 FORWARD LENGTH=270
Length = 269
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 20/225 (8%)
Query: 6 LAGDMTHIMSVLVLLLKIHTIKSCAGVSLKTQELYALVFATRYLDIFTDFISLYN--TVM 63
+A + H + + VL+ K+ K+CAG+SLK+QEL A+ A R ++ F+ Y+ T++
Sbjct: 47 VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHTIL 103
Query: 64 KMIFLGSSFSIVWYIRRHKMVRRSYDKDHDTFRHQFXXXXXXXXXXXIHEKFT---FREV 120
+ LG++ +++ IR + ++ +Y ++ D F + IH + +
Sbjct: 104 DLATLGTTLWVIYMIRFN--LKTTYMEEKDNFALYYVLAPCVVLAVWIHPSTSHNILNRI 161
Query: 121 MWTFSIYLEAVAILPQLVLLQRTRNVDNLTGQYVFFLGAYRALYILNWAY-------RYF 173
W F +YLEAV++LPQL ++Q T+ V+ T YVF LG R +W R
Sbjct: 162 SWGFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFFSCAHWVLQMMDTHGRLL 221
Query: 174 TEPHYVHW--ITWISGFVQTLLYADFFYYYLNSL-KNNVKLTLPD 215
Y W + IS VQT + ADF YYY+ S+ + L LP
Sbjct: 222 VVLGYGLWPSMVIISEIVQTFILADFCYYYVKSVFGGQLVLRLPS 266
>AT1G75760.1 | chr1:28446940-28448421 REVERSE LENGTH=273
Length = 272
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 112/225 (49%), Gaps = 20/225 (8%)
Query: 6 LAGDMTHIMSVLVLLLKIHTIKSCAGVSLKTQELYALVFATRYLDIFTDFISLYN--TVM 63
+A + H + + VL+ K+ ++CAG+SLK+QEL AL A R ++ F+ ++ T++
Sbjct: 50 VAAEAVHSLGISVLIYKLTKERTCAGLSLKSQELTALFLAVR---LYCSFVMEFDIHTLL 106
Query: 64 KMIFLGSSFSIVWYIRRHKMVRRSYDKDHDTFRHQFXXXXXXXXXXXIHEK---FTFREV 120
L ++ +++ IR ++ SY D D F + IH ++
Sbjct: 107 DSATLVTTLFVIYMIRFK--LKASYMDDKDNFAIYYVVIPCVVLSVLIHPSTHHHIINKI 164
Query: 121 MWTFSIYLEAVAILPQLVLLQRTRNVDNLTGQYVFFLGAYRALYILNWAY-------RYF 173
W F +YLEAV++LPQL ++Q T+ V+ T YVF LG R L +W R
Sbjct: 165 SWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGIARFLSCAHWVLQVLDTRGRLL 224
Query: 174 TEPHYVHW--ITWISGFVQTLLYADFFYYYLNSL-KNNVKLTLPD 215
T Y W + +S VQT + ADF YYY+ SL + L LP
Sbjct: 225 TALGYGFWPIMVLLSEIVQTFILADFCYYYVKSLMGGQLVLRLPS 269
>AT3G25160.1 | chr3:9160337-9162023 REVERSE LENGTH=273
Length = 272
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 119/237 (50%), Gaps = 37/237 (15%)
Query: 2 NAFRLAGDMTHIMSVLVLLLKIHTIKSCAGVSLKTQELYALVFATRYL-------DIFT- 53
N F +A ++ H +L+L+ K+ K+C+G+SLK+QE+ A+ A R + DI T
Sbjct: 48 NHFFIASELIHAAGILILIYKLTRQKTCSGLSLKSQEVTAIFLAVRLICSINMEGDIHTV 107
Query: 54 -DFISLYNTVMKMIFLGSSFSIVWYIRRHKMVRRSYDKDHDTFRHQFXXXXXXXXXXXIH 112
DF +L +T+ V Y+ R+K+ + SY K DT + + I+
Sbjct: 108 LDFATLVSTLW-----------VIYMIRYKL-KASYIKSLDTCYNYYVLVPSAILALIIN 155
Query: 113 EKFT---FREVMWTFSIYLEAVAILPQLVLLQRTRNVDNLTGQYVFFLGAYRALYILNWA 169
+ F ++W F +Y E+V++LPQL L+Q + ++ T YVF LG R L +W
Sbjct: 156 PSTSYSYFHRILWAFCVYTESVSVLPQLRLMQNAQIIEPFTAHYVFALGIARFLACAHWI 215
Query: 170 YRYF-TEPHYVHW----------ITWISGFVQTLLYADFFYYYLNS-LKNNVKLTLP 214
+ T HY+ W + ++ VQT + ADF YYY+ S ++ + L +P
Sbjct: 216 IQVVETRGHYL-WLLGAGYFWFPVALLAEIVQTFILADFCYYYVKSVMEGQLVLKMP 271
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.332 0.142 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,207,101
Number of extensions: 156565
Number of successful extensions: 462
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 452
Number of HSP's successfully gapped: 7
Length of query: 215
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 121
Effective length of database: 8,529,465
Effective search space: 1032065265
Effective search space used: 1032065265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 109 (46.6 bits)