BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0545600 Os08g0545600|Os08g0545600
(295 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0545600 Cyclin-like F-box domain containing protein 446 e-125
Os03g0356680 92 6e-19
Os03g0664300 92 6e-19
Os03g0677500 85 7e-17
Os03g0669900 83 3e-16
Os03g0652400 82 6e-16
Os12g0634300 80 2e-15
Os03g0629200 80 2e-15
Os03g0653100 79 3e-15
Os01g0824700 Cyclin-like F-box domain containing protein 76 2e-14
Os07g0453200 73 3e-13
Os03g0668000 Cyclin-like F-box domain containing protein 70 2e-12
Os03g0667900 70 2e-12
Os04g0113000 Cyclin-like F-box domain containing protein 68 6e-12
Os07g0189400 Cyclin-like F-box domain containing protein 65 6e-11
Os07g0556700 65 6e-11
>Os08g0545600 Cyclin-like F-box domain containing protein
Length = 295
Score = 446 bits (1147), Expect = e-125, Method: Compositional matrix adjust.
Identities = 227/277 (81%), Positives = 227/277 (81%)
Query: 19 ISLAASRVVCSAWRAAVDANRLLRADLLPLSVAGIVVNPLSLGSRFLCRPNXXXXXXXXX 78
ISLAASRVVCSAWRAAVDANRLLRADLLPLSVAGIVVNPLSLGSRFLCRPN
Sbjct: 19 ISLAASRVVCSAWRAAVDANRLLRADLLPLSVAGIVVNPLSLGSRFLCRPNAAATIADDL 78
Query: 79 XXXRNTSRGIFNRFDFRVSDHCNGLFLVDDDVQHVVNPDTRQWAXXXXXXXXXXXXXXKL 138
RNTSRGIFNRFDFRVSDHCNGLFLVDDDVQHVVNPDTRQWA KL
Sbjct: 79 DDIRNTSRGIFNRFDFRVSDHCNGLFLVDDDVQHVVNPDTRQWAPLPGYPPPHPCYPHKL 138
Query: 139 FSPTICLVFDPAVSPHFEVLVIXXXXXXXXXXXXXXXXXFVLRAFSSRTGGDQWEDRISL 198
FSPTICLVFDPAVSPHFEVLVI FVLRAFSSRTGGDQWEDRISL
Sbjct: 139 FSPTICLVFDPAVSPHFEVLVIPRLRSELRRPREWPPSPFVLRAFSSRTGGDQWEDRISL 198
Query: 199 SNGTYRVIQSEPSMSLRYREKHPDLYLGKSEKGRDSYXXXXXXXESNRHAKHVTFLGFHP 258
SNGTYRVIQSEPSMSLRYREKHPDLYLGKSEKGRDSY ESNRHAKHVTFLGFHP
Sbjct: 199 SNGTYRVIQSEPSMSLRYREKHPDLYLGKSEKGRDSYDDDDDHHESNRHAKHVTFLGFHP 258
Query: 259 FDEEVVFLGETFRRGFAYNLNNSEIQDLGLYDIFLKQ 295
FDEEVVFLGETFRRGFAYNLNNSEIQDLGLYDIFLKQ
Sbjct: 259 FDEEVVFLGETFRRGFAYNLNNSEIQDLGLYDIFLKQ 295
>Os03g0356680
Length = 451
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 90/199 (45%), Gaps = 34/199 (17%)
Query: 21 LAASRVVCSAWRAAVDANRLLRADLLPLSVAGIVVN-PLSLGSRFLCRPNXXXXXXXXXX 79
LAA R VC WRA VD +RLLRADLLPLS+ GI +N L S FL RP+
Sbjct: 32 LAACRCVCKPWRAVVDGHRLLRADLLPLSLGGIFINFHEVLTSFFLRRPS---------- 81
Query: 80 XXRNTSRGIFNRF-DF-------RVSDHCNGLFLVDDDVQHVVNPDTRQWAXXXXXXXXX 131
R + I +F DF V DHCNGL L+ ++VVNP T++WA
Sbjct: 82 -ARPPAAAISGKFEDFTPSAARSTVVDHCNGLLLLRS--RYVVNPATQRWAAFPEPPPPR 138
Query: 132 XXXXXKLFSPTICLVFDPAVSPHFEVLVIXXXXXX---------XXXXXXXXXXXFVLRA 182
+ LVFDP VSPH+EV +I L
Sbjct: 139 PGITRSFYHDEY-LVFDPTVSPHYEVFLIPSVTPEEFVSKKLRPKVEESEWPPSPCFLSV 197
Query: 183 FSSRTGGDQWEDRISLSNG 201
FSS TG QWE+R + G
Sbjct: 198 FSSSTG--QWEERSFVREG 214
>Os03g0664300
Length = 468
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 110/268 (41%), Gaps = 82/268 (30%)
Query: 20 SLAASRVVCSAWRAAVDANRLLRADLLPLSVAGIVVNPLSLG-SRFLCRPNXXXXXXXXX 78
SLAA+R VC+AWRA +D RLLR DLLPLS+AGI ++ L F RP+
Sbjct: 31 SLAAARCVCAAWRATIDDRRLLRTDLLPLSLAGIFIHFDDLRFPEFFSRPSTP------- 83
Query: 79 XXXRNTSRGIFNRFDFR--------VSDHCNGLFLVDDDVQHVVNPDTRQWAXXXXXXXX 130
T+ I + D+ V+DHCNGL L+ HVVNP TR+
Sbjct: 84 -----TTPAISGKLDYMPNKYALYAVNDHCNGLLLL---YTHVVNPATRR-----CVTLP 130
Query: 131 XXXXXXKLFSPTICLVFDPAVSPHFEVLVIXXXXXXX-----XXXXXXXXXXFVLRAFSS 185
FS +VFDP VSPH+EV+ I F+L FSS
Sbjct: 131 LLPPSRGTFSDNY-IVFDPTVSPHYEVIRISYLMCNMRLDPIIRESEWPPSPFLLNVFSS 189
Query: 186 RTGGDQWED------------------------------------------RISLSNGTY 203
T QWED R+SL++G Y
Sbjct: 190 AT--KQWEDRLFVREGEAAGTIGDLVKLYSRQHYAAYWHGALYVHRCNYVTRLSLTDGKY 247
Query: 204 RVIQSEPSMSLRYREKHPDLYLGKSEKG 231
+VI++ + + K YLGKSE G
Sbjct: 248 KVIKNPQDIDM---SKCLKFYLGKSENG 272
>Os03g0677500
Length = 479
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 91/207 (43%), Gaps = 28/207 (13%)
Query: 21 LAASRVVCSAWRAAVDANRLLRADLLPLSVAGIVVN-PLSLGSRFLCRPNXXXXXXXXXX 79
LAASR VC AW+A +D+ RLLRADLLPLS++GI N S F P+
Sbjct: 28 LAASRCVCKAWQAIIDSRRLLRADLLPLSLSGIYFNFHDERHSVFFSHPS---------- 77
Query: 80 XXRNTSRGIFNRFD---FRVSDHCNGLFLVDDDVQHVVNPDTRQWAXXXXXXXXXXXXXX 136
R G+F + RV DHCNGL L+ V NP TRQWA
Sbjct: 78 -TRPIISGMFTDYTPNADRVEDHCNGLVLL---WGGVANPTTRQWA-PFPEPPPPCTEIK 132
Query: 137 KLFSPTICLVFDPAVSPHFEVLVI-------XXXXXXXXXXXXXXXXXFVLRAFSSRTGG 189
+ + L++DP +S H+E+ I VL FSSRTG
Sbjct: 133 GVCQLSNYLMYDPTISSHYEIFQIPRALDRYHDELDPMDDTSQWPPSPSVLNVFSSRTG- 191
Query: 190 DQWEDRISLSNGTYRVIQSEPSMSLRY 216
+WE R + G ++ ++S Y
Sbjct: 192 -EWEKRSYVREGEAAGTVADMALSFPY 217
>Os03g0669900
Length = 489
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 83/201 (41%), Gaps = 28/201 (13%)
Query: 21 LAASRVVCSAWRAAVDANRLLRADLLPLSVAGIVVN-PLSLGSRFLCRPNXXXXXXXXXX 79
LAA R VC AWR A+D LLRADLLPLS+AG +N S + RP
Sbjct: 47 LAACRCVCKAWRDAIDGGGLLRADLLPLSLAGFFLNFSCHDYSEYFSRPTTTTTTTTTTC 106
Query: 80 XXRNTSRGIFNRFDFRVS--------DHCNGLFLVDDDVQHVVNPDTRQWAXXXXXXXXX 131
I + DF S DHCNGL L++ VVNP T+ W
Sbjct: 107 HRHL----ITGKLDFLPSEGEWQMALDHCNGLLLLESGC--VVNPATKAWMDLTPYPPPP 160
Query: 132 XXXXXKL---FSPTICLVFDPAVSPHFEVLVIXX--------XXXXXXXXXXXXXXXFVL 180
+ P LVFDP +SPHFEVL+I VL
Sbjct: 161 PLIEEEQEVKTYPEEHLVFDPTLSPHFEVLIIPHLLPFDKDRSKKQPPQNSAWPPSPLVL 220
Query: 181 RAFSSRTGGDQWEDRISLSNG 201
FSSRT +WE+R + G
Sbjct: 221 NVFSSRT--REWEERPFVREG 239
>Os03g0652400
Length = 478
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 107/268 (39%), Gaps = 76/268 (28%)
Query: 20 SLAASRVVCSAWRAAVDANRLLRADLLPLSVAGIVVNPLSLG-SRFLCRPNXXXXXXXXX 78
SLAA R VC+ WR+ +D+ RLLRADLLPLS+AGI ++ L F RP+
Sbjct: 34 SLAALRCVCTDWRSTIDSRRLLRADLLPLSLAGIFIDFWGLRFPDFFSRPSP-------- 85
Query: 79 XXXRNTSRGIFNRFDFR----VSDHCNGLFLVDDDVQHVVNPDTRQWAXXXXXXXXXXXX 134
+FN F + DHCNGLFL+ VVNP T++WA
Sbjct: 86 ----TPISDVFNFFPLEKGPDIMDHCNGLFLL--FSLLVVNPATQRWACLPPLPSHSTKL 139
Query: 135 XXKLFSPTICLVFDPAVSPHFEVLVIXXXXXXXX---------XXXXXXXXXFVLRAFSS 185
+VFDP VSPH+EV +I +L FSS
Sbjct: 140 DFWFLYNQGLIVFDPIVSPHYEVFMIPFVNSEQYCIEIADLVLKESEWPPSPLILHVFSS 199
Query: 186 RTGGDQWED------------------------------------------RISLSNGTY 203
++WE+ RIS+S+G+Y
Sbjct: 200 --AAERWEERSFVREGDSAGTVAYAQRQCHLDNHGNFYWRGALYVNSYFLMRISISDGSY 257
Query: 204 RVIQSEPSMSLRYREKHPDLYLGKSEKG 231
+VI + + P +Y+GKSEKG
Sbjct: 258 QVIH----YPIEVYKSRPHVYVGKSEKG 281
>Os12g0634300
Length = 462
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 84/191 (43%), Gaps = 13/191 (6%)
Query: 20 SLAASRVVCSAWRAAVDANRLL-RADLLPLSVAGIVVN-PLSLGSRFLCRPNXXXXXXXX 77
SLAASR VC +WR +D LL A LLP ++ GI V + S F RP+
Sbjct: 16 SLAASRCVCQSWRVIIDDRSLLATAALLPCTLRGIFVQIGVPTLSGFFARPSPAGTRRPP 75
Query: 78 XXXXRNTSRGIFNRFD---FRVSDHCNGLFLVDDDVQHVVNPDTRQWAXXXXXXXXXXXX 134
+ N+ + + DHCNGL L+D HVVNP TRQW
Sbjct: 76 IPGVLDLDYLDTNQIEKSLLTIVDHCNGLILLD---HHVVNPATRQWTRLPPYPPESPGS 132
Query: 135 XXKLFSPTICLVFDPAVSPHFEVLVIXXXXXXXXXXXXXXXXXFVLRAFSSRTGGD---- 190
+ LVFDPA+SPH++V ++ +L FSSRT +
Sbjct: 133 DI-ILDGYHALVFDPAMSPHYQVFLMPYVLRRATVSGQWPPSPLLLHVFSSRTEPEGSTW 191
Query: 191 QWEDRISLSNG 201
+WE+R + G
Sbjct: 192 RWEERSFVREG 202
>Os03g0629200
Length = 635
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 89/207 (42%), Gaps = 26/207 (12%)
Query: 21 LAASRVVCSAWRAAVDANRLLRADLLPLSVAGIVVNPLSL-GSRFLCRPNXXXXXXXXXX 79
LA SR VC AWRA VD LLR DLLPL++ GI N + S FL RP+
Sbjct: 28 LAVSRCVCKAWRAVVDTRHLLRTDLLPLTLTGIYFNFHDIHHSVFLSRPSTRPGPAIS-- 85
Query: 80 XXRNTSRGIFNRF---DFRVSDHCNGLFLVDDDVQHVVNPDTRQWAXXXXXXXXXXXXXX 136
G+F + + V DHCNGL L++ V NP TRQW
Sbjct: 86 -------GMFTDYTPDNNLVKDHCNGLLLLESG---VANPATRQWV-PFPPAPPQPVWMK 134
Query: 137 KLFSPTICLVFDPAVSPHFEVLVIXXXXXX-------XXXXXXXXXXXFVLRAFSSRTGG 189
+ LVFDP +S H+E+ I VL+ FSSRT
Sbjct: 135 DFYRFDSYLVFDPTISTHYEIFKIPRVPSIRFHVLDPMLKSSQWPPSLCVLQVFSSRT-- 192
Query: 190 DQWEDRISLSNGTYRVIQSEPSMSLRY 216
+W +R+ + +G ++ +++ Y
Sbjct: 193 REWGERLFVRDGAAAGTVTDMALAFSY 219
>Os03g0653100
Length = 413
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 96/221 (43%), Gaps = 30/221 (13%)
Query: 20 SLAASRVVCSAWRAAVDANRLLRADLLPLSVAGIVVNPLSLG-SRFLCRPNXXXXXXXXX 78
SLAA R VC+ WR+ +D+ LLRADLLPLS+AGI ++ L F RP
Sbjct: 34 SLAALRCVCTDWRSTIDSRGLLRADLLPLSLAGIFIDFWGLRFPDFFSRPPP-------- 85
Query: 79 XXXRNTSRGIFNRFDFR----VSDHCNGLFLVDDDVQHVVNPDTRQWAXXXXXXXXXXXX 134
G+F+ F + DHCNGLFL+ VVNP T++WA
Sbjct: 86 ----TPISGVFDFFPLEEGPDIMDHCNGLFLL--FSLLVVNPATQRWACLPPLPSHSTEL 139
Query: 135 XXKLFSPTICLVFDPAVSPHFEVLVIXXXXXXXXXXXXXXXXXFVLRA----FSSRTGGD 190
+ +VFDP VSPH+E LR + T
Sbjct: 140 DFRFLYDQGLIVFDPIVSPHYES---DGRRDHLSEKEILQEPWLTLRGSVIWINVETSIG 196
Query: 191 QWEDRISLSNGTYRVIQSEPSMSLRYREKHPDLYLGKSEKG 231
IS+S+G+Y+VI + + P +Y GKSEKG
Sbjct: 197 MERSTISISDGSYQVIHH----PIEVYKSRPYVYFGKSEKG 233
>Os01g0824700 Cyclin-like F-box domain containing protein
Length = 348
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 100/272 (36%), Gaps = 81/272 (29%)
Query: 21 LAASRVVCSAWRAAVDANRLLRADLLPLSVAGIVVNPLSLG-SRFLCRPNXXXXXXXXXX 79
LA SR VC W +D +R+LR DLLP SV GI +N LG S F RP+
Sbjct: 29 LAMSRCVCKLWCTIIDTHRMLRVDLLPHSVGGIFINFHDLGLSEFFARPSTGP------- 81
Query: 80 XXRNTSRGIFNRFDFR--VSDHCNGLFLVDDDVQ-------HVVNPDTRQWAXXXXXXXX 130
T G N V HCNGL L+ + +VVNP TRQW
Sbjct: 82 ----TISGNINYLPLTSIVRGHCNGLLLLYSHISRPGMKQFYVVNPATRQWVQLPPPPRP 137
Query: 131 XXXXXXKLFSPTICLVFDPAVSPHFEVLVIX--------XXXXXXXXXXXXXXXXFVLRA 182
+ + L FDP +S HFEV I VL
Sbjct: 138 DIGI---MHLDNLYLAFDPTLSSHFEVFQIPYVDVFRHRSELNPAIEGIEWPPSTCVLHV 194
Query: 183 FSSRTGGDQWED--------------------------------------------RISL 198
FS+RT QWE+ RISL
Sbjct: 195 FSTRT--RQWEERSFVREGEAAGSLAIIRRDFPNFLHNAVYCRGVLYVRCQTNFVMRISL 252
Query: 199 SNGTYRVIQSEPSMSLRYREKHPDLYLGKSEK 230
S+G YR+I+ P RY E ++Y+G S+K
Sbjct: 253 SDGKYRIIKP-PVEIERYEES--NIYMGLSQK 281
>Os07g0453200
Length = 281
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 66/150 (44%), Gaps = 24/150 (16%)
Query: 21 LAASRVVCSAWRAAVDANRLLRADLLPLSVAGIVVNPLSLG-SRFLCRPNXXXXXXXXXX 79
LA SR VC WR +DA LLR DLLP V GI +N L S F+ RP+
Sbjct: 46 LAISRCVCKPWRTIIDARCLLRVDLLPHLVGGIFINFHDLILSEFISRPSIGP------- 98
Query: 80 XXRNTSRGIFNRFDFR--VSDHCNGLFLVDDDVQ-------HVVNPDTRQWAXXXXXXXX 130
T G FN V DHCNGL L+D +VVNP TRQW
Sbjct: 99 ----TISGNFNYLPHNSIVRDHCNGLLLLDGYADYPATRQYYVVNPATRQWVQLPPCPSS 154
Query: 131 XXXXXXKLFSPTICLVFDPAVSPHFEVLVI 160
+ T LVFDP +S FE + +
Sbjct: 155 HPGMYSE---STEYLVFDPGLSSQFENITV 181
>Os03g0668000 Cyclin-like F-box domain containing protein
Length = 452
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 100/267 (37%), Gaps = 65/267 (24%)
Query: 20 SLAASRVVCSAWRAAVDANRLLRADLLPLSVAGIVVNPLSLGSRFLCRPNXXXXXXXXXX 79
SLAA R VC WR VD RLLRADLLP S+AGI VN L S
Sbjct: 22 SLAACRCVCKPWRDLVDDRRLLRADLLPRSLAGIFVNFHCLYSSEFFARPPAAAAAISGN 81
Query: 80 XXRNTSRGIFNRF-DFRVSDHCNGLFLVD-DDVQHVVNPDTRQWAXXXXXXXXXXXXXXK 137
+ ++++ +V HCNGL L+ D+ VVNP TR W
Sbjct: 82 FDFLPPKDEYDQYRHHQVEGHCNGLLLIRFRDL--VVNPATRWWDRLPPRPLPRDEMDR- 138
Query: 138 LFSPTICLVFDPAVSP-HFEVLVI----------XXXXXXXXXXXXXXXXXFVLRAFSSR 186
LVFDPAVSP H+EV + + L FSSR
Sbjct: 139 --IDAAYLVFDPAVSPRHYEVFLTPSFRWKSESEKAELDPMVEASEWPPESYTLPVFSSR 196
Query: 187 TG------------------------------GDQWED------------RISLSNGTYR 204
TG G W RISL++ Y+
Sbjct: 197 TGLWQERSFIRQGQAAGTIADMRSDWASDQRNGVYWRGALYVHCQTNFVIRISLNDDKYQ 256
Query: 205 VIQSEPSMSLRYREKHPDLYLGKSEKG 231
VI+ P S RY + YLG+SEKG
Sbjct: 257 VIKP-PEYSGRYL----NFYLGRSEKG 278
>Os03g0667900
Length = 410
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 56/108 (51%), Gaps = 12/108 (11%)
Query: 20 SLAASRVVCSAWRAAVDANRLLRADLLPLSVAGIVVNPLSLG-SRFLCRPNXXXXXXXXX 78
SLAA VC WR VD RLLRADLLP S+AGI +N L F RP+
Sbjct: 21 SLAACCRVCKPWRDLVDDRRLLRADLLPRSLAGIFLNFSGLCYPEFFARPSTTAGATTAI 80
Query: 79 XXXRNTSRGIFNRFD----FRVSDHCNGLFLVDDDVQHVVNPDTRQWA 122
+S F FD +++ DHCNGL L+ D VVNP TR WA
Sbjct: 81 -----SSLLDFLPFDGTKWYKIEDHCNGLLLL--DCNCVVNPATRWWA 121
>Os04g0113000 Cyclin-like F-box domain containing protein
Length = 471
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 66/143 (46%), Gaps = 21/143 (14%)
Query: 21 LAASRVVCSAWRAAVDANRLLRADLLPLSVAGIVVNPLSLG-SRFLCRPNXXXXXXXXXX 79
LA SR VC W ++A+ LL DLLP + GI +N L S F RP+
Sbjct: 34 LAISRCVCKTWCTIIEAHNLLHVDLLPRPLCGIFINFNELSMSEFFSRPSKGP------- 86
Query: 80 XXRNTSRGIFNRFDFR--VSDHCNGLFLVDDDVQHVVNPDTRQWAXXXXXXXXXXXXXXK 137
T G F+ + DHCNGL L ++VVNP TRQ A
Sbjct: 87 ----TVSGNFDYLPCSSCIIDHCNGLLLFH---KYVVNPATRQSA---PLPPCPYMVVEH 136
Query: 138 LFSPTICLVFDPAVSPHFEVLVI 160
+F LVFDP +SPHFEV +I
Sbjct: 137 IFHREY-LVFDPTLSPHFEVFMI 158
>Os07g0189400 Cyclin-like F-box domain containing protein
Length = 139
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 59/113 (52%), Gaps = 26/113 (23%)
Query: 21 LAASRVVCSAWRAAVDANRLLRADLLPLSVAGIVVNPLSLG-SRFLCRPNXXXXXXXXXX 79
+AA R VC WR+ VD RLLRADLLPLS+AGI++N S ++FL RP
Sbjct: 20 IAAPRCVCKEWRSLVDGRRLLRADLLPLSLAGILLNYDSTWFTQFLSRP----------- 68
Query: 80 XXRNTSRGIFNRFDFR---------VSDHCNGLFLVDDDVQH--VVNPDTRQW 121
+ + R D+ V DHCNGL L+ + VVNP TRQW
Sbjct: 69 ---TAAAAVSCRLDYTVPPPPAYIYVKDHCNGLLLLLREECRLVVVNPATRQW 118
>Os07g0556700
Length = 449
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 100/257 (38%), Gaps = 71/257 (27%)
Query: 20 SLAASRVVCSAWRAAVDANRLLRADLLPLSVAGIVVNPLSLGSRFLCRPNXXXXXXXXXX 79
SLAA R VCSA RA VD R+LRADLLPL +AGI + + + +F RP
Sbjct: 22 SLAACRCVCSALRALVDDRRVLRADLLPLKLAGIFIGVIWV-PQFFARP--------VLP 72
Query: 80 XXRNTSRGIFNRFDFRVSDHCNGLFLVDDDVQHVVNPDTRQWAXX-XXXXXXXXXXXXKL 138
+ +R D R NGL L + VVNP T +WA +
Sbjct: 73 HALDLTRLPETMLDCR-----NGLLLAHN---VVVNPATGRWARLPRSPPPPPGCSCNDV 124
Query: 139 FSPTICLVFDPAVSPHFEVLVIXXXXXXXXXXXXXXXXXFVLRAFSSRTGGDQWED---- 194
F LVFDP VS H+EV I F++ FSS+T QWE
Sbjct: 125 FDY---LVFDPTVSAHYEVYKI--PSPFGDGMSDWPPSPFIIDVFSSKTL--QWEKRSYV 177
Query: 195 ----------------------------------------RISLSNGTYRVIQSEPSMSL 214
RISLS+G Y+VI+S + L
Sbjct: 178 REGEAAGTVANLLARGFNCHQRSALWRGALYVPCETDFVTRISLSDGKYQVIKS--PIGL 235
Query: 215 RYREKHPDLYLGKSEKG 231
K L LGKS+ G
Sbjct: 236 EAMGKGSFLQLGKSKDG 252
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.140 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,835,182
Number of extensions: 257135
Number of successful extensions: 843
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 808
Number of HSP's successfully gapped: 16
Length of query: 295
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 195
Effective length of database: 11,814,401
Effective search space: 2303808195
Effective search space used: 2303808195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)