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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0189400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.85 (0.033) R2 : 0.00749
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.129 (0.0694) R2dN8 : 0.00967 R2N8 : 0.00749
σ : 0.621
deviance : 177.04
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
150.14 0.576 2.85 -0.112 0.0913 3.07 0.1 -11.4 0.145 9.66 89.55 109 8.13 1.07
164.27 0.597 2.85 -0.108 0.0841 1.72 -0.102 -- 0.137 8.15 89.93 168 8.42 0.0163
150.17 0.571 2.85 -0.107 0.0911 3.02 -- -11.2 0.146 10.3 89.51 109 8.13 1.05
164.17 0.597 2.85 -0.106 0.0916 1.7 -- -- 0.136 10.2 90 160 8.44 0.0355
150.66 0.572 2.86 -0.108 -- 2.97 -- -10.9 0.146 -- 89.53 109 8.12 1.02
175.34 0.621 2.85 -0.102 0.143 -- -0.168 -- 0.117 10.3 -- -- -- --
175.45 0.62 2.85 -0.109 0.145 -- -- -- 0.117 10 -- -- -- --
164.67 0.598 2.85 -0.107 -- 1.75 -- -- 0.136 -- 89.94 157 8.45 0.0322
164.46 0.597 2.85 -- 0.0921 1.7 -- -- 0.148 10.3 89.97 162 8.45 0.0607
176.72 0.621 2.85 -0.111 -- -- -- -- 0.117 -- -- -- -- --
175.76 0.62 2.85 -- 0.146 -- -- -- 0.129 10.1 -- -- -- --
164.97 0.598 2.85 -- -- 1.75 -- -- 0.148 -- 89.84 155 8.45 0.0509
177.04 0.621 2.85 -- -- -- -- -- 0.129 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 159.39 humidity 90.0 90 > th dose independent rect. 8 1
3 159.89 humidity 90.0 90 > th dose dependent rect. 8 1
5 161.79 wind 5.0 10 > th dose independent rect. 10 1
9 161.79 wind 5.0 10 > th dose dependent rect. 10 1
13 161.94 wind 7.0 90 > th dose dependent rect. 8 1
15 162.14 wind 7.0 90 > th dose independent rect. 8 1
37 163.22 wind 9.0 90 > th dose dependent rect. 20 14
68 165.37 atmosphere 1005.0 30 > th dose dependent rect. 4 1
71 165.56 temperature 25.0 30 > th dose dependent rect. 4 1
81 165.96 temperature 25.0 10 > th dose independent rect. 4 1
84 166.17 radiation 1.0 30 < th dose dependent rect. 4 14
102 167.07 wind 1.0 30 > th dose dependent rect. 4 1
105 167.16 precipitation 0.1 10 > th dose independent rect. 17 1
133 167.16 precipitation 0.1 10 > th dose dependent rect. 17 1
161 167.17 humidity 80.0 10 > th dose independent rect. 10 1
163 167.19 humidity 90.0 10 < th dose independent rect. 4 1
166 167.29 atmosphere 1005.0 10 < th dose independent rect. 9 1
174 167.33 humidity 80.0 10 > th dose dependent rect. 10 1
183 167.45 radiation 30.0 10 < th dose independent rect. 9 1
190 167.52 temperature 20.0 30 < th dose independent rect. 8 7
203 168.05 temperature 20.0 10 < th dose dependent rect. 12 2
206 168.10 temperature 20.0 10 < th dose independent rect. 12 2
208 168.18 wind 1.0 30 > th dose independent rect. 4 1
219 168.27 humidity 90.0 10 > th dose independent rect. 17 1
229 168.27 humidity 90.0 10 > th dose dependent rect. 17 1
269 168.48 radiation 1.0 30 < th dose independent rect. 4 14
272 168.51 wind 3.0 270 > th dose dependent rect. 6 1
275 168.57 radiation 1.0 10 < th dose independent rect. 11 3
283 168.57 atmosphere 1005.0 90 < th dose dependent rect. 9 1
284 168.57 radiation 1.0 10 < th dose dependent rect. 11 3
309 168.59 radiation 1.0 10 < th dose independent rect. 13 1
324 168.59 radiation 1.0 10 < th dose dependent rect. 13 1
349 168.88 atmosphere 1005.0 10 < th dose dependent rect. 9 1
376 169.06 wind 9.0 30 < th dose independent rect. 5 23
382 169.21 temperature 25.0 10 < th dose dependent rect. 14 1
384 169.22 wind 3.0 30 < th dose independent rect. 4 1
385 169.22 humidity 80.0 30 > th dose independent rect. 4 1
386 169.22 precipitation 0.1 30 < th dose independent rect. 4 1
388 169.22 precipitation 0.1 30 < th dose dependent rect. 4 1
392 169.23 temperature 10.0 30 > th dose independent rect. 4 1
394 169.23 temperature 30.0 30 < th dose independent rect. 4 1
395 169.23 humidity 50.0 30 > th dose independent rect. 4 1
398 169.23 atmosphere 995.0 30 > th dose independent rect. 4 1
399 169.23 atmosphere 1010.0 30 < th dose independent rect. 4 1
401 169.23 radiation 1.0 30 < th dose independent rect. 4 1
406 169.23 temperature 10.0 30 > th dose independent rect. 5 23
407 169.23 radiation 30.0 30 < th dose dependent rect. 4 1
419 169.27 atmosphere 1005.0 90 > th dose dependent rect. 13 1
420 169.28 atmosphere 1005.0 30 > th dose independent rect. 4 1
452 169.50 temperature 15.0 1440 > th dose independent rect. 6 22
463 169.57 temperature 15.0 1440 > th dose independent rect. 19 9
480 169.59 humidity 50.0 30 > th dose dependent rect. 4 1
488 169.65 wind 9.0 30 < th dose dependent rect. 4 1
491 169.70 temperature 15.0 720 < th dose independent rect. 2 1
496 169.70 temperature 15.0 720 < th dose dependent rect. 2 1
500 169.73 temperature 30.0 30 < th dose dependent rect. 4 1
514 169.77 radiation 30.0 30 < th dose independent rect. 21 13
523 169.86 humidity 50.0 30 > th dose dependent rect. 21 13
525 169.87 atmosphere 1015.0 30 < th dose dependent rect. 4 1
527 169.89 temperature 20.0 30 < th dose dependent rect. 21 1
542 169.91 temperature 20.0 90 < th dose independent rect. 20 1
546 169.92 temperature 15.0 1440 > th dose independent rect. 11 17
547 169.92 precipitation 0.1 30 < th dose independent rect. 5 23
550 169.92 precipitation 0.1 30 < th dose dependent rect. 5 23
566 169.97 temperature 15.0 1440 < th dose independent rect. 11 13
569 169.98 radiation 40.0 10 < th dose dependent rect. 9 1
579 170.03 temperature 20.0 270 < th dose independent rect. 10 1
588 170.06 temperature 20.0 270 < th dose dependent rect. 10 1
598 170.06 temperature 15.0 1440 < th dose dependent rect. 11 13
599 170.07 radiation 20.0 1440 < th dose independent rect. 17 13
601 170.08 humidity 90.0 270 > th dose independent rect. 11 1
602 170.08 precipitation 0.1 270 > th dose independent rect. 10 1
608 170.08 humidity 90.0 270 > th dose dependent rect. 11 1
609 170.08 precipitation 0.1 270 > th dose dependent rect. 10 1
613 170.09 temperature 15.0 1440 > th dose independent rect. 16 12
617 170.13 humidity 60.0 43200 < th dose independent rect. 23 1
618 170.13 humidity 60.0 43200 < th dose dependent rect. 23 1
619 170.13 radiation 1.0 30 < th dose dependent rect. 4 12
623 170.14 temperature 20.0 270 < th dose dependent rect. 10 4
633 170.20 temperature 15.0 1440 < th dose independent rect. 23 1
647 170.20 temperature 15.0 1440 < th dose dependent rect. 23 1
671 170.25 temperature 25.0 90 < th dose independent rect. 16 1
678 170.28 atmosphere 1015.0 4320 > th dose independent rect. 15 1
679 170.28 temperature 20.0 270 < th dose independent rect. 10 3
681 170.28 atmosphere 1015.0 4320 > th dose dependent rect. 15 1
690 170.32 temperature 15.0 1440 < th dose dependent rect. 10 15
706 170.37 radiation 40.0 10 > th dose dependent rect. 14 1
754 170.44 wind 3.0 1440 > th dose independent rect. 21 1
785 170.45 wind 3.0 1440 < th dose independent rect. 21 1
805 170.47 temperature 15.0 1440 > th dose independent rect. 23 5
841 170.52 temperature 15.0 1440 < th dose dependent sin 17 NA
873 170.56 atmosphere 1005.0 30 > th dose independent rect. 13 2
890 170.57 humidity 70.0 10 > th dose independent rect. 21 14
902 170.60 atmosphere 1005.0 30 > th dose dependent rect. 13 4
950 170.65 temperature 20.0 10 < th dose dependent rect. 8 7