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Os04g0113000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.65 (0.0178) R2 : 0.175
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.368 (0.0374) R2dN8 : 0.226 R2N8 : 0.175
σ : 0.335
deviance : 51.45
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.87 0.273 7.64 0.2 0.352 -0.233 1.24 0.364 -0.355 7.79 20 82 -- --
34.28 0.273 7.63 0.199 0.342 -0.26 1.22 -- -0.351 7.19 19.53 79 -- --
38.01 0.287 7.64 0.214 0.381 -0.253 -- 0.257 -0.359 7.5 20.27 102 -- --
37.47 0.285 7.64 0.208 0.348 -0.295 -- -- -0.359 6.88 19.99 76 -- --
43.97 0.309 7.65 0.256 -- -0.277 -- 0.108 -0.361 -- 18.95 69 -- --
36.96 0.285 7.63 0.189 0.43 -- 0.938 -- -0.348 8.66 -- -- -- --
39.75 0.295 7.63 0.221 0.426 -- -- -- -0.347 9.03 -- -- -- --
43.62 0.308 7.65 0.229 -- -0.31 -- -- -0.344 -- 19.99 65 -- --
38.39 0.289 7.64 -- 0.364 -0.302 -- -- -0.379 6.93 20.01 76 -- --
50.17 0.331 7.64 0.22 -- -- -- -- -0.344 -- -- -- -- --
41.03 0.3 7.64 -- 0.426 -- -- -- -0.371 8.99 -- -- -- --
44.76 0.312 7.65 -- -- -0.33 -- -- -0.381 -- 20.04 65 -- --
51.45 0.335 7.65 -- -- -- -- -- -0.368 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.51 temperature 20.0 90 > th dose dependent rect. 1 8
14 31.29 temperature 20.0 270 > th dose independent rect. 24 8
17 31.34 temperature 20.0 270 > th dose independent rect. 1 6
77 32.39 temperature 20.0 270 > th dose independent rect. 2 14
157 32.94 temperature 30.0 720 < th dose dependent rect. 23 7
172 33.04 radiation 30.0 30 < th dose independent rect. 13 20
183 33.12 atmosphere 995.0 30 > th dose dependent rect. 9 6
210 33.19 radiation 10.0 270 < th dose independent rect. 1 16
211 33.19 temperature 25.0 720 < th dose dependent rect. 1 1
220 33.22 temperature 25.0 720 < th dose dependent rect. 24 3
222 33.23 radiation 10.0 270 < th dose independent rect. 3 5
224 33.24 radiation 10.0 30 > th dose independent rect. 9 6
232 33.25 humidity 90.0 270 < th dose dependent rect. 20 15
237 33.28 radiation 30.0 10 < th dose independent rect. 2 8
242 33.29 atmosphere 1005.0 90 > th dose independent rect. 9 6
245 33.29 temperature 15.0 720 > th dose dependent rect. 21 6
248 33.30 temperature 20.0 270 < th dose independent rect. 1 12
257 33.31 radiation 10.0 270 < th dose independent rect. 23 19
258 33.31 wind 1.0 30 > th dose independent rect. 9 21
264 33.32 radiation 20.0 10 < th dose independent rect. 6 23
278 33.35 humidity 70.0 90 > th dose independent rect. 2 7
292 33.36 atmosphere 995.0 30 > th dose dependent rect. 9 17
308 33.40 radiation 20.0 90 < th dose independent rect. 2 8
312 33.41 temperature 25.0 10 > th dose independent rect. 6 3
332 33.43 humidity 90.0 270 < th dose dependent sin 8 NA
344 33.45 temperature 20.0 30 > th dose dependent rect. 6 3
350 33.46 wind 1.0 30 > th dose independent rect. 9 19
361 33.47 wind 9.0 90 < th dose independent rect. 9 16
367 33.48 temperature 20.0 270 < th dose independent sin 4 NA
391 33.50 radiation 20.0 270 < th dose dependent rect. 23 19
397 33.51 humidity 90.0 30 < th dose dependent rect. 20 19
412 33.53 radiation 20.0 10 < th dose independent rect. 1 23
427 33.55 temperature 20.0 270 > th dose independent sin 5 NA
432 33.56 radiation 20.0 10 < th dose independent rect. 6 3
436 33.56 wind 1.0 30 > th dose independent rect. 9 17
437 33.56 wind 9.0 10 < th dose independent rect. 9 17
440 33.56 radiation 20.0 90 < th dose independent rect. 21 23
448 33.57 radiation 40.0 720 > th dose independent rect. 13 22
449 33.57 radiation 20.0 90 < th dose independent rect. 1 23
454 33.57 radiation 20.0 270 < th dose dependent rect. 1 16
456 33.58 temperature 20.0 720 > th dose independent rect. 21 6
457 33.58 humidity 80.0 10 < th dose independent rect. 9 6
461 33.58 radiation 30.0 10 < th dose dependent rect. 6 3
462 33.58 atmosphere 1000.0 30 > th dose dependent rect. 2 7
471 33.59 radiation 20.0 90 < th dose independent sin 4 NA
477 33.59 wind 7.0 270 < th dose independent rect. 7 18
491 33.60 temperature 10.0 30 > th dose dependent rect. 15 18
507 33.62 temperature 10.0 90 > th dose dependent rect. 9 16
509 33.63 radiation 20.0 10 < th dose independent sin 3 NA
533 33.64 temperature 20.0 270 > th dose independent rect. 12 19
593 33.68 humidity 70.0 30 > th dose independent rect. 6 3
599 33.68 humidity 50.0 1440 > th dose independent rect. 3 7
639 33.70 atmosphere 995.0 270 > th dose dependent rect. 7 18
649 33.71 radiation 20.0 10 < th dose independent rect. 2 18
651 33.71 wind 1.0 270 > th dose independent rect. 7 20
665 33.72 humidity 80.0 90 < th dose independent rect. 2 13
678 33.73 atmosphere 995.0 1440 > th dose independent rect. 16 18
680 33.73 atmosphere 995.0 30 > th dose dependent rect. 9 4
681 33.73 wind 9.0 30 < th dose dependent rect. 2 7
692 33.74 radiation 40.0 10 < th dose independent rect. 15 18
696 33.74 temperature 25.0 720 < th dose dependent rect. 3 1
712 33.75 radiation 20.0 10 < th dose independent rect. 21 23
719 33.75 radiation 40.0 90 < th dose dependent rect. 12 21
720 33.75 radiation 40.0 10 < th dose dependent rect. 13 21
722 33.76 wind 7.0 90 < th dose independent rect. 1 8
724 33.76 precipitation 0.1 90 < th dose independent rect. 9 16
734 33.76 precipitation 0.1 90 < th dose dependent rect. 9 16
740 33.77 wind 7.0 10 < th dose independent rect. 2 7
744 33.77 humidity 80.0 270 < th dose independent rect. 1 10
758 33.77 atmosphere 995.0 30 > th dose dependent rect. 9 21
771 33.78 atmosphere 1005.0 270 > th dose dependent rect. 2 4
777 33.79 temperature 10.0 90 > th dose independent rect. 1 8
780 33.79 atmosphere 995.0 90 > th dose independent rect. 1 8
781 33.79 atmosphere 1015.0 90 < th dose independent rect. 1 8
782 33.79 precipitation 0.1 90 < th dose independent rect. 1 8
786 33.79 temperature 10.0 90 > th dose independent rect. 9 16
790 33.79 radiation 20.0 90 < th dose independent rect. 23 23
794 33.79 precipitation 0.1 90 < th dose dependent rect. 1 8
807 33.80 atmosphere 995.0 30 > th dose independent rect. 15 18
817 33.80 radiation 40.0 10 < th dose dependent rect. 2 8
822 33.81 wind 9.0 30 < th dose independent rect. 9 6
823 33.81 temperature 10.0 1440 > th dose independent rect. 10 6
833 33.81 temperature 10.0 1440 > th dose independent rect. 16 18
839 33.81 radiation 20.0 270 < th dose dependent sin 5 NA
842 33.81 humidity 90.0 30 < th dose dependent rect. 9 6
851 33.82 temperature 30.0 90 < th dose independent rect. 1 8
856 33.82 humidity 50.0 30 > th dose independent rect. 9 17
873 33.83 temperature 20.0 720 < th dose independent rect. 1 2
874 33.83 wind 3.0 10 < th dose independent rect. 2 7
877 33.83 temperature 10.0 10 > th dose independent rect. 2 7
881 33.83 temperature 10.0 1440 > th dose independent rect. 3 7
884 33.83 temperature 30.0 10 < th dose independent rect. 2 7
886 33.83 humidity 50.0 10 > th dose independent rect. 2 7
890 33.83 atmosphere 995.0 10 > th dose independent rect. 2 7
892 33.83 atmosphere 995.0 1440 > th dose independent rect. 3 7
893 33.83 atmosphere 1015.0 10 < th dose independent rect. 2 7
899 33.83 temperature 10.0 10 > th dose independent rect. 9 17
903 33.83 temperature 10.0 1440 > th dose independent rect. 10 17
916 33.83 humidity 50.0 90 > th dose dependent rect. 2 7
920 33.83 radiation 30.0 270 < th dose dependent rect. 1 8
928 33.84 temperature 20.0 720 < th dose independent rect. 24 4
929 33.84 temperature 10.0 30 > th dose independent rect. 9 6
932 33.84 atmosphere 1015.0 30 < th dose independent rect. 9 6
933 33.84 precipitation 0.1 30 < th dose independent rect. 9 6
944 33.84 humidity 80.0 90 < th dose independent rect. 23 16
946 33.84 temperature 10.0 30 > th dose independent rect. 15 18
957 33.84 radiation 20.0 270 < th dose dependent rect. 2 6
958 33.84 precipitation 0.1 30 < th dose dependent rect. 9 6
991 33.85 precipitation 0.1 30 < th dose independent rect. 15 18
1000 33.85 humidity 90.0 10 < th dose dependent rect. 9 4