Os03g0668000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os03g0668000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.32 | 0.424 | 8.12 | 0.76 | 0.47 | -0.687 | 0.0544 | -0.0332 | 0.0848 | 15.9 | 28.36 | 4743 | -- | -- |
| 81.07 | 0.419 | 8.12 | 0.738 | 0.47 | -0.691 | 0.056 | -- | 0.0748 | 15.8 | 27.9 | 4775 | -- | -- |
| 81.33 | 0.42 | 8.12 | 0.76 | 0.47 | -0.687 | -- | -0.0324 | 0.085 | 15.9 | 28.36 | 4745 | -- | -- |
| 81.07 | 0.419 | 8.12 | 0.728 | 0.471 | -0.696 | -- | -- | 0.0742 | 15.8 | 27.9 | 4775 | -- | -- |
| 93.32 | 0.45 | 8.12 | 0.728 | -- | -0.73 | -- | 0.0875 | 0.0724 | -- | 28.4 | 4826 | -- | -- |
| 97.43 | 0.463 | 8.11 | 0.972 | 0.497 | -- | -0.0231 | -- | 0.146 | 16.2 | -- | -- | -- | -- |
| 97.44 | 0.462 | 8.11 | 0.972 | 0.496 | -- | -- | -- | 0.146 | 16.2 | -- | -- | -- | -- |
| 93.02 | 0.449 | 8.12 | 0.691 | -- | -0.73 | -- | -- | 0.0571 | -- | 27.7 | 4791 | -- | -- |
| 92.39 | 0.448 | 8.15 | -- | 0.454 | -0.928 | -- | -- | -0.0385 | 15.7 | 26.74 | 4804 | -- | -- |
| 110.78 | 0.492 | 8.11 | 0.952 | -- | -- | -- | -- | 0.133 | -- | -- | -- | -- | -- |
| 122.33 | 0.517 | 8.13 | -- | 0.478 | -- | -- | -- | 0.0378 | 16.2 | -- | -- | -- | -- |
| 103.7 | 0.474 | 8.15 | -- | -- | -0.941 | -- | -- | -0.0504 | -- | 26.7 | 4804 | -- | -- |
| 134.68 | 0.542 | 8.13 | -- | -- | -- | -- | -- | 0.0272 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.90 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 3 | 82.26 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 4 | 82.27 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 6 | 82.41 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 7 | 82.42 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 8 |
| 9 | 82.43 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 10 | 2 |
| 12 | 82.43 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 1 | 14 |
| 16 | 82.45 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 5 | 10 |
| 36 | 82.50 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 5 |
| 45 | 82.53 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 4 | NA |
| 150 | 82.80 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 171 | 82.82 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 180 | 82.84 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 217 | 82.91 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 13 | 2 |
| 228 | 82.92 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 6 | 20 |
| 258 | 82.94 | temperature | 25.0 | 4320 | > th | dose dependent | no | NA | NA |
| 280 | 82.96 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 13 | 23 |
| 295 | 82.98 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 9 | 23 |
| 410 | 83.19 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 9 | 2 |
| 452 | 83.25 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 473 | 83.30 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 17 |
| 474 | 83.30 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 17 |
| 477 | 83.30 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 17 |
| 530 | 83.37 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 540 | 83.39 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 585 | 83.45 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 9 |
| 589 | 83.45 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 9 |
| 595 | 83.46 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 9 |
| 596 | 83.46 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 8 | 14 |
| 605 | 83.46 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 8 | 14 |
| 608 | 83.47 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 10 | 12 |
| 626 | 83.48 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 8 | 11 |
| 637 | 83.49 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 8 | 14 |
| 646 | 83.50 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 21 | NA |
| 647 | 83.50 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 10 | 12 |
| 651 | 83.50 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 21 | NA |
| 655 | 83.50 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 10 | 12 |
| 657 | 83.51 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 21 | NA |
| 698 | 83.54 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 5 |
| 722 | 83.56 | temperature | 20.0 | 720 | > th | dose dependent | sin | 3 | NA |
| 744 | 83.57 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 790 | 83.63 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 823 | 83.66 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 836 | 83.67 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 1 | 2 |
| 897 | 83.72 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 921 | 83.74 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 937 | 83.76 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 3 | 13 |
| 964 | 83.77 | temperature | 10.0 | 4320 | > th | dose dependent | sin | 22 | NA |