BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0495300 Os08g0495300|Os08g0495300
(243 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0495300 Conserved hypothetical protein 416 e-117
Os08g0495200 Conserved hypothetical protein 176 1e-44
Os06g0136100 Conserved hypothetical protein 117 8e-27
Os06g0134300 Conserved hypothetical protein 96 3e-20
Os06g0133700 91 7e-19
Os06g0134500 Conserved hypothetical protein 79 4e-15
Os06g0134400 Conserved hypothetical protein 72 4e-13
>Os08g0495300 Conserved hypothetical protein
Length = 243
Score = 416 bits (1068), Expect = e-117, Method: Compositional matrix adjust.
Identities = 203/243 (83%), Positives = 203/243 (83%)
Query: 1 MPPVXXXXXXXXXXXXXXXXXXXXCAPSCQEEEEDHVVETASAQTHADPPYAKEGHVPXX 60
MPPV CAPSCQEEEEDHVVETASAQTHADPPYAKEGHVP
Sbjct: 1 MPPVRTYGRRQRRRRGSRLSPTRSCAPSCQEEEEDHVVETASAQTHADPPYAKEGHVPSS 60
Query: 61 XXXXXXXXXXXXXXXXXXEDLALKLKDVLHYQPICENHIWYYHLNFTAKTKEADGLDSTS 120
EDLALKLKDVLHYQPICENHIWYYHLNFTAKTKEADGLDSTS
Sbjct: 61 ITATSSSSQQADAVDQDTEDLALKLKDVLHYQPICENHIWYYHLNFTAKTKEADGLDSTS 120
Query: 121 DNLFFVEVKRMGIGNYEEMLVSCFCMVNPDNGKPCKGCTNNGTVDMKHPDTDEYFAGHLD 180
DNLFFVEVKRMGIGNYEEMLVSCFCMVNPDNGKPCKGCTNNGTVDMKHPDTDEYFAGHLD
Sbjct: 121 DNLFFVEVKRMGIGNYEEMLVSCFCMVNPDNGKPCKGCTNNGTVDMKHPDTDEYFAGHLD 180
Query: 181 AYLPFGCFGKWSDSNDDDKYVKAREAKLRHMYEKTSIMMVVSGESVTIHYHSQLPCGSLK 240
AYLPFGCFGKWSDSNDDDKYVKAREAKLRHMYEKTSIMMVVSGESVTIHYHSQLPCGSLK
Sbjct: 181 AYLPFGCFGKWSDSNDDDKYVKAREAKLRHMYEKTSIMMVVSGESVTIHYHSQLPCGSLK 240
Query: 241 KPI 243
KPI
Sbjct: 241 KPI 243
>Os08g0495200 Conserved hypothetical protein
Length = 227
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/137 (62%), Positives = 101/137 (73%), Gaps = 3/137 (2%)
Query: 80 DLALKLKDVLHYQPICENHIWYYHLNFTAKTKEADGLDSTSDNLFFVEVKRMGIGNYEEM 139
DLA L+DVLHYQ + + + YYHLNFT KTKEAD LD+ DNLFFVE++R G G +EEM
Sbjct: 89 DLAHMLQDVLHYQSVRDKFMGYYHLNFTTKTKEADDLDAGIDNLFFVEIRRSGRGKHEEM 148
Query: 140 LVSCFCMVNP---DNGKPCKGCTNNGTVDMKHPDTDEYFAGHLDAYLPFGCFGKWSDSND 196
LV+CFCMVNP D K C GC N G+VDMKHPD +Y GHLD PF C +WSDS D
Sbjct: 149 LVNCFCMVNPTDNDEDKICYGCANQGSVDMKHPDPCKYDGGHLDMGRPFECVEEWSDSED 208
Query: 197 DDKYVKAREAKLRHMYE 213
D +YVK +EAK+RHMYE
Sbjct: 209 DAEYVKTKEAKIRHMYE 225
>Os06g0136100 Conserved hypothetical protein
Length = 408
Score = 117 bits (293), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/134 (48%), Positives = 81/134 (60%), Gaps = 5/134 (3%)
Query: 80 DLALKLKDVLHYQPICENHIWYYHLNFTAKTKEADGLDSTSDNLFFVEVKRMGIGNYEEM 139
D A +LKD L + I E+ Y+HLNFTAK K ADG +NLFF E+ M G YE
Sbjct: 248 DFAYELKDFLQHGVIYEDQRQYHHLNFTAKVKRADGCGV--ENLFFAEISHMQ-GEYE-W 303
Query: 140 LVSCFCMVNPDNGKPCKGCTNNGTVDMKHPDTDEYFAGHLDAYLPFGCFGKWSDSNDDDK 199
+VSC C++ P C GC NNG V MKHP+ D Y GHLD YLPFG ++ +ND++
Sbjct: 304 VVSCCCIIKPSANGHCYGCRNNGYVGMKHPNNDAYSGGHLDGYLPFG-VNSYARNNDEEL 362
Query: 200 YVKAREAKLRHMYE 213
VK E LR MY+
Sbjct: 363 SVKDEEDMLRRMYK 376
>Os06g0134300 Conserved hypothetical protein
Length = 416
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 65/108 (60%), Gaps = 8/108 (7%)
Query: 79 EDLALKLKDVLHYQPICENHIWYYHLNFTAKTKEADGLDSTSDNLFFVEVKRMGIGNYEE 138
EDLA +L+DV+HYQ I E W+ H NFTAKT AD DNLFF EV M E+
Sbjct: 268 EDLAYELQDVVHYQLIVEGIKWFNHFNFTAKTSGAD-----IDNLFFAEV--MSSQGEED 320
Query: 139 MLVSCFCMVNPDNGKPCKGCTNNGTVDMKHP-DTDEYFAGHLDAYLPF 185
+V+C C++ + C GC N+ +DMKHP D+D Y GH D +PF
Sbjct: 321 WVVTCCCLIKSADNGICYGCKNDRNLDMKHPNDSDTYVGGHKDIVMPF 368
>Os06g0133700
Length = 315
Score = 90.9 bits (224), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 75/138 (54%), Gaps = 11/138 (7%)
Query: 80 DLALKLKDVLHYQPICENHIWYYHLNFTAKTKEADGLDSTSDNLFFVEVKRMGIGNYEEM 139
D A +LK+ L + E+ +YYH+NFT KTK A DNLFF E+ M +E
Sbjct: 172 DFAYELKEFLQIGVMYEDQRYYYHINFTTKTKGAHKSGCAMDNLFFAELSHM--QGKDEW 229
Query: 140 LVSCFCMVNPDNGKPCKGCTNNGTVDMKHP-DTDEYFAGHLDAYLPFGC---FGKWSDSN 195
++SC C++ P C GC N+G +KHP ++D Y GHLD LPFG K+ N
Sbjct: 230 VISCCCVIKPAANGHCYGCRNDGKSGLKHPNNSDAYSGGHLDGCLPFGLNDSRSKYDGLN 289
Query: 196 DDDKYVKAREAKLRHMYE 213
+D+ EA LR +Y+
Sbjct: 290 PEDE-----EAMLRSLYK 302
>Os06g0134500 Conserved hypothetical protein
Length = 364
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 6/101 (5%)
Query: 79 EDLALKLKDVLHYQPICENHIWYYHLNFTAKTKEADGLDSTSDNLFFVEVKRMGIGNYEE 138
EDLA +LK V++Y+PI E+ W+ H+NFTA TK +GLD SD+LFF E M + ++
Sbjct: 225 EDLAFELKGVINYEPIIESRRWFDHINFTATTKGLNGLD--SDHLFFAEA--MSLKGEKD 280
Query: 139 MLVSCFCMVNPDNGKPCKGCTNNGTVDMKHP-DTDEYFAGH 178
+V+C +++ D+ C C G MKHP D + Y GH
Sbjct: 281 YVVTCCSLISSDDNGNCYTC-KIGNKSMKHPSDVNSYVGGH 320
>Os06g0134400 Conserved hypothetical protein
Length = 407
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 81 LALKLKDVLHYQPICENHIWYYHLNFTAKTKEADGLDSTSDNLFFVEVKRMGIGNYEEML 140
LA +LKDV+H+QPI E+ W+ HLNFTA TK + LD +LFF E+ M + ++ +
Sbjct: 257 LAYELKDVIHFQPIMESCTWFDHLNFTALTKGDNELDYQI-HLFFAEL--MCLVGQKDYI 313
Query: 141 VSCFCMVNPDNGKPCKGCTNNGTVDMKHP-DTDEYFAGH 178
V+C C + D+ C C V++KHP DT++Y GH
Sbjct: 314 VTCCCALKSDDNGNCYNCKLQ-NVNLKHPNDTNQYAGGH 351
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.135 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,822,786
Number of extensions: 294538
Number of successful extensions: 685
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 679
Number of HSP's successfully gapped: 7
Length of query: 243
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 145
Effective length of database: 11,918,829
Effective search space: 1728230205
Effective search space used: 1728230205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)