FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0495200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.09 (0.0261) R2 : 0.357
β1 : -0.076 (0.0951) R2dD : 0.000945 R2D : -0.0018
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.75 (0.17) R2dE : 0.163 R2E : 0.191
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.67 (0.808) R2dD*E : 0.168 R2D*E : 0.202
γ1 : -0.103 (0.0575) R2dN8 : 0.00665 R2N8 : -0.017
σ : 0.483
deviance : 107.49
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1008
memory length : 6
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.08
open length of G : 3.18

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
107.19 0.486 3.09 -0.0774 0.067 1.78 0.0831 -8.69 -0.105 11.2 1008 7 2.08 3.2
133.18 0.542 3.1 0.0238 0.0312 1.75 0.556 -- -0.0715 15.3 1007 6 2.25 3.28
107.21 0.482 3.09 -0.0739 0.0679 1.79 -- -8.73 -0.105 11.9 1008 6 2.09 3.2
133.96 0.539 3.1 0.0346 0.0583 1.76 -- -- -0.0706 11.5 1007 6 2.15 3.23
107.49 0.483 3.09 -0.076 -- 1.75 -- -8.67 -0.103 -- 1008 6 2.08 3.18
162 0.597 3.05 0.0421 0.215 -- -0.797 -- 0.112 4.52 -- -- -- --
163.66 0.599 3.05 0.0481 0.213 -- -- -- 0.116 5.02 -- -- -- --
134.17 0.539 3.1 0.0333 -- 1.74 -- -- -0.0694 -- 1007 6 2.19 3.19
133.99 0.539 3.1 -- 0.0577 1.76 -- -- -0.0744 11.4 1007 6 2.16 3.24
166.06 0.602 3.05 0.0558 -- -- -- -- 0.122 -- -- -- -- --
163.72 0.599 3.05 -- 0.214 -- -- -- 0.111 5.01 -- -- -- --
134.2 0.54 3.1 -- -- 1.74 -- -- -0.0732 -- 1007 6 2.15 3.35
166.14 0.602 3.06 -- -- -- -- -- 0.115 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 113.40 atmosphere 1005.0 10 > th dose dependent rect. 2 3
4 120.64 humidity 90.0 90 < th dose independent rect. 2 3
15 126.55 humidity 90.0 10 < th dose independent rect. 3 2
19 128.09 atmosphere 1005.0 30 > th dose independent rect. 2 3
20 128.33 humidity 90.0 10 < th dose dependent rect. 3 2
30 131.19 humidity 90.0 90 < th dose dependent rect. 2 1
32 131.42 humidity 90.0 90 < th dose dependent rect. 2 3
44 133.29 temperature 25.0 90 > th dose dependent rect. 2 2
45 133.29 temperature 25.0 90 > th dose dependent rect. 1 4
47 133.44 temperature 25.0 270 > th dose independent rect. 1 1
48 133.49 atmosphere 1005.0 90 > th dose independent rect. 2 1
49 133.51 temperature 25.0 90 > th dose independent rect. 1 3
84 135.72 wind 3.0 30 < th dose independent rect. 2 3
119 137.24 wind 5.0 30 < th dose dependent rect. 2 3
138 138.42 wind 3.0 90 < th dose independent rect. 2 1
139 138.47 temperature 10.0 30 > th dose dependent rect. 2 3
150 139.20 precipitation 0.1 30 < th dose independent rect. 2 3
151 139.20 precipitation 0.1 30 < th dose dependent rect. 2 3
153 139.29 wind 5.0 90 < th dose dependent rect. 2 1
155 139.41 wind 9.0 1440 < th dose independent rect. 3 3
156 139.41 temperature 10.0 1440 > th dose independent rect. 3 3
159 139.41 temperature 30.0 1440 < th dose independent rect. 3 3
163 139.41 humidity 50.0 1440 > th dose independent rect. 3 3
172 139.41 atmosphere 995.0 1440 > th dose independent rect. 3 3
173 139.41 radiation 20.0 1440 < th dose independent rect. 3 3
182 139.41 temperature 10.0 1440 > th dose independent rect. 6 21
187 139.51 wind 9.0 30 < th dose independent rect. 5 21
191 139.62 temperature 10.0 30 > th dose independent rect. 2 3
193 139.62 temperature 30.0 30 < th dose independent rect. 2 3
194 139.62 humidity 50.0 30 > th dose independent rect. 2 3
197 139.62 atmosphere 995.0 30 > th dose independent rect. 2 3
198 139.62 atmosphere 1010.0 30 < th dose independent rect. 2 3
200 139.62 radiation 1.0 30 < th dose independent rect. 2 3
205 139.62 temperature 10.0 30 > th dose independent rect. 5 21
206 139.62 radiation 30.0 30 < th dose dependent rect. 2 3
208 139.63 radiation 10.0 30 < th dose dependent rect. 2 3
215 139.68 precipitation 0.1 30 < th dose independent rect. 5 21
216 139.68 precipitation 0.1 30 < th dose dependent rect. 5 21
220 139.71 atmosphere 995.0 30 > th dose independent rect. 5 21
275 141.11 precipitation 0.1 90 < th dose independent rect. 2 1
276 141.11 precipitation 0.1 90 < th dose dependent rect. 2 1
278 141.12 temperature 10.0 90 > th dose independent rect. 2 1
280 141.12 temperature 30.0 90 < th dose independent rect. 2 1
281 141.12 humidity 50.0 90 > th dose independent rect. 2 1
284 141.12 atmosphere 995.0 90 > th dose independent rect. 2 1
285 141.12 atmosphere 1010.0 90 < th dose independent rect. 2 1
287 141.12 radiation 1.0 90 < th dose independent rect. 2 1
292 141.12 temperature 10.0 90 > th dose independent rect. 3 23
293 141.12 radiation 1.0 90 < th dose dependent rect. 2 1
301 141.32 temperature 10.0 90 > th dose dependent rect. 2 1
304 141.37 atmosphere 995.0 90 > th dose independent rect. 3 23
319 141.91 radiation 10.0 43200 < th dose dependent rect. 3 1
322 141.99 temperature 30.0 30 < th dose independent rect. 5 21
329 142.13 wind 9.0 1440 < th dose independent rect. 3 1
330 142.13 temperature 10.0 1440 > th dose independent rect. 3 1
333 142.13 temperature 30.0 1440 < th dose independent rect. 3 1
337 142.13 humidity 50.0 1440 > th dose independent rect. 3 1
346 142.13 atmosphere 995.0 1440 > th dose independent rect. 3 1
347 142.13 radiation 1.0 1440 < th dose independent rect. 3 1
367 142.13 temperature 10.0 1440 > th dose independent rect. 4 23
371 142.13 radiation 1.0 1440 < th dose dependent rect. 3 1
393 142.34 precipitation 0.1 90 < th dose independent rect. 3 23
394 142.34 precipitation 0.1 90 < th dose dependent rect. 3 23
397 142.36 humidity 50.0 30 > th dose independent rect. 5 21
422 142.91 radiation 1.0 30 < th dose dependent rect. 2 10
424 142.94 radiation 1.0 30 < th dose dependent rect. 2 6
433 142.96 wind 7.0 90 > th dose independent rect. 23 9
435 142.98 wind 5.0 90 > th dose dependent rect. 24 8
441 143.00 wind 1.0 90 > th dose independent rect. 2 1
442 143.00 wind 7.0 90 > th dose independent rect. 23 6
446 143.03 wind 5.0 90 > th dose independent rect. 24 1
450 143.03 wind 5.0 90 > th dose dependent rect. 24 6
458 143.06 wind 9.0 90 < th dose independent rect. 3 23
477 143.11 wind 3.0 10 > th dose dependent rect. 1 3
506 143.17 wind 5.0 90 > th dose dependent rect. 24 1
509 143.18 humidity 50.0 30 > th dose dependent rect. 2 1
539 143.35 precipitation 0.1 270 > th dose independent rect. 22 1
541 143.35 precipitation 0.1 270 > th dose dependent rect. 22 1
545 143.39 radiation 1.0 10 < th dose independent rect. 2 6
555 143.48 wind 1.0 30 > th dose independent rect. 5 21
587 143.88 humidity 50.0 30 > th dose dependent rect. 2 3
612 144.16 wind 3.0 10 > th dose independent rect. 2 1
618 144.23 temperature 30.0 90 < th dose dependent rect. 2 1
620 144.25 wind 1.0 30 > th dose independent rect. 2 3
655 144.41 atmosphere 1015.0 30 < th dose dependent rect. 2 1
675 144.66 temperature 30.0 30 < th dose dependent rect. 2 3
708 145.05 wind 3.0 10 > th dose independent rect. 24 3
722 145.19 atmosphere 1015.0 30 < th dose independent rect. 5 21
845 146.47 temperature 10.0 30 > th dose dependent rect. 5 21
858 146.61 temperature 20.0 10 < th dose dependent rect. 3 1
875 146.76 wind 3.0 270 < th dose independent rect. 23 5
978 147.37 temperature 25.0 1440 < th dose independent rect. 1 1