BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0494400 Os08g0494400|AK065332
(238 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0494400 Conserved hypothetical protein 417 e-117
Os06g0134300 Conserved hypothetical protein 114 7e-26
Os06g0136100 Conserved hypothetical protein 110 1e-24
Os06g0134500 Conserved hypothetical protein 94 1e-19
Os06g0134400 Conserved hypothetical protein 87 7e-18
Os08g0495200 Conserved hypothetical protein 81 8e-16
Os10g0494950 Conserved hypothetical protein 75 5e-14
>Os08g0494400 Conserved hypothetical protein
Length = 238
Score = 417 bits (1071), Expect = e-117, Method: Compositional matrix adjust.
Identities = 200/213 (93%), Positives = 200/213 (93%)
Query: 26 APYQEEEHVVETASAKARADPLYAKEGHVPSYIAATSSSCQQADAVAQDTEVLXXXXXXX 85
APYQEEEHVVETASAKARADPLYAKEGHVPSYIAATSSSCQQADAVAQDTEVL
Sbjct: 26 APYQEEEHVVETASAKARADPLYAKEGHVPSYIAATSSSCQQADAVAQDTEVLPPSGSCL 85
Query: 86 XXXXXXHVWARHVKDWGLIFYIRVDLQGSFHTYPDVGGPFQSSQEADKAIDRYLEDHRDP 145
HVWARHVKDWGLIFYIRVDLQGSFHTYPDVGGPFQSSQEADKAIDRYLEDHRDP
Sbjct: 86 SSSPASHVWARHVKDWGLIFYIRVDLQGSFHTYPDVGGPFQSSQEADKAIDRYLEDHRDP 145
Query: 146 KMHIGQNDDISSMENVIRRCLYWPDGTIKRRTKSFATWEAKKRMHQFIQALVDKYNDDHN 205
KMHIGQNDDISSMENVIRRCLYWPDGTIKRRTKSFATWEAKKRMHQFIQALVDKYNDDHN
Sbjct: 146 KMHIGQNDDISSMENVIRRCLYWPDGTIKRRTKSFATWEAKKRMHQFIQALVDKYNDDHN 205
Query: 206 LLGVCFLSISFSVLLPWLHCLIYLIMYSLRFIL 238
LLGVCFLSISFSVLLPWLHCLIYLIMYSLRFIL
Sbjct: 206 LLGVCFLSISFSVLLPWLHCLIYLIMYSLRFIL 238
>Os06g0134300 Conserved hypothetical protein
Length = 416
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 89/172 (51%), Gaps = 15/172 (8%)
Query: 36 ETASAKARADPLYAKEGHVPSYIAATSSSCQQADAVAQDTEVLXXXXXXXXXXXXXHVWA 95
E+ DP A +PS TS EV +W
Sbjct: 111 ESPEPTTLGDPFTATTSSLPSAPHGTS-------------EVSPSSRLRHHTSPESTIWT 157
Query: 96 RHVKDWGLIFYIRVDLQGSFHTYPDVGGPFQSSQEADKAIDRYLEDHRDPKMHIGQNDDI 155
R DW I++IR+D GSFHTYP + GPF + EA+ AI+R+LE + P + D +
Sbjct: 158 RDPADWPWIYHIRMDRGGSFHTYPALDGPFLNLYEAEDAINRHLESLKCPMFK--EQDGV 215
Query: 156 SSMENVIRRCLYWPDGTIKRRTKSFATWEAKKRMHQFIQALVDKYNDDHNLL 207
S +E +I++ LYWPDGT K+ ++S A+ KR Q +Q L+DKYNDDH+L+
Sbjct: 216 SPVERMIQKSLYWPDGTRKKYSRSQASQNVDKRRRQMVQVLLDKYNDDHDLV 267
>Os06g0136100 Conserved hypothetical protein
Length = 408
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 87/152 (57%), Gaps = 7/152 (4%)
Query: 59 AATSSSCQQADAVAQDTEVLXXXXXXXXXXXXXHVWARHVKDWGLIFYIRVDLQGSFHTY 118
A TSSS DTE + R + W +FYIR+D G FH Y
Sbjct: 101 AHTSSSSSPLTVQHDDTETSTPSQCCLWSSPGSSILVRRPRGWYFVFYIRMDPGGCFHMY 160
Query: 119 PDVG-GPFQSSQEADKAIDRYLEDHRDPKMHIGQN-DDISSMENVIRRCLYWPDGTIKRR 176
PDVG GP+QS E D AI+++L D R P+M G+ D + ME +IR+ +YWPDG ++R
Sbjct: 161 PDVGCGPYQSLSEVDDAINQHLHDLRIPEM--GEELDRLPLMEKMIRQAMYWPDGK-RKR 217
Query: 177 TKSFATWEAKKRMHQFIQALVDKYNDDHNLLG 208
KS +E K + H IQALV+KYN+DHNLLG
Sbjct: 218 CKSAGYFE-KDKCH-LIQALVEKYNEDHNLLG 247
>Os06g0134500 Conserved hypothetical protein
Length = 364
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 89/184 (48%), Gaps = 7/184 (3%)
Query: 27 PYQEEEHVVETASAKARADPLYAKEGHVPSYIAATSSSCQQADAVAQDTEVLXXXXXXXX 86
P Q E+HV T S A L G + SS AV DT
Sbjct: 45 PAQCEDHVGGT-SGLADVSSLGDFPGATTLKESTASSPTSSLQAVPDDTIDAPQSGHCLS 103
Query: 87 XXXXXHVWAR---HVKDWGLIFYIRVDLQGSFHTYPDVGGPFQSSQEADKAIDRYLEDHR 143
+W + H + +++IR D GSFHTYPD+GGPFQS EA+ I ++ +
Sbjct: 104 SSLGSIIWVQKPPHGRPG--VYHIRKDRLGSFHTYPDLGGPFQSLNEAEDVISSHI-NKL 160
Query: 144 DPKMHIGQNDDISSMENVIRRCLYWPDGTIKRRTKSFATWEAKKRMHQFIQALVDKYNDD 203
P + + S ++ +IR+ LYWPDGT K+ +K+ A M+Q + ++D YNDD
Sbjct: 161 YPPVKFEERAGESYVDMIIRKALYWPDGTRKKCSKAEAFQNVNNNMNQLAKVILDMYNDD 220
Query: 204 HNLL 207
HNLL
Sbjct: 221 HNLL 224
>Os06g0134400 Conserved hypothetical protein
Length = 407
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
Query: 105 FYIRVDLQGSFHTYPDVGGPFQSSQEADKAIDRYLEDHRDPKMHIGQNDDISSMENVIRR 164
++IR+D G FHTYPD+GGPF S EA A +L + P + + D S ++ ++R+
Sbjct: 153 YHIRMDRSGLFHTYPDMGGPFLSLNEAQDAFTSHL-NILYPPLKFEERDGESIVDMMVRK 211
Query: 165 CLYWPDGTIKRRTKSFATWEAKKRMHQFIQALVDKYNDDHNLLG 208
LY+PDGT +R +KS T + M Q + ++D YNDDH+LLG
Sbjct: 212 ILYFPDGTRRRYSKSQVTQDVHNDMRQLARVILDMYNDDHSLLG 255
>Os08g0495200 Conserved hypothetical protein
Length = 227
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 47/58 (81%)
Query: 151 QNDDISSMENVIRRCLYWPDGTIKRRTKSFATWEAKKRMHQFIQALVDKYNDDHNLLG 208
+ D +S M+ ++R+ +YWPDG+IK+RTKS+AT + KRM Q +QALVDKYN+DHNL G
Sbjct: 31 KQDGVSDMDIIVRQSIYWPDGSIKKRTKSYATEKTHKRMCQLVQALVDKYNEDHNLFG 88
>Os10g0494950 Conserved hypothetical protein
Length = 406
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 104 IFYIRVDLQGSFHTYPDVGGPFQSSQEADKAIDRYLEDHRDPKMHIGQNDDISSMENVIR 163
+FYIR+D +GS TYPDVGGPFQ EAD AI +L D Q+ + S ++ +I
Sbjct: 135 LFYIRIDPRGSCWTYPDVGGPFQRVDEADDAIKCFL-DELQHGARCTQSGEFSRVDRMIH 193
Query: 164 RCLYWPDGTIKRRTKSFATWEAKKRMHQFIQALVDKYNDDHNLLG 208
C ++ G KR S ++ +QA++D+YNDD+ L G
Sbjct: 194 DCKHYLYGPPKRDPSSPSSKTTYDEKQYLVQAILDQYNDDNKLFG 238
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,793,323
Number of extensions: 251394
Number of successful extensions: 652
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 645
Number of HSP's successfully gapped: 8
Length of query: 238
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 140
Effective length of database: 11,918,829
Effective search space: 1668636060
Effective search space used: 1668636060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 154 (63.9 bits)