Os08g0494400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0494400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.38 | 0.178 | 11.5 | -0.39 | 0.407 | -0.719 | 0.21 | -0.0396 | -0.0307 | 12.8 | 20.12 | 789 | -- | -- |
| 14.37 | 0.177 | 11.5 | -0.39 | 0.408 | -0.698 | 0.191 | -- | -0.0314 | 12.8 | 20.24 | 844 | -- | -- |
| 14.53 | 0.178 | 11.5 | -0.389 | 0.407 | -0.69 | -- | 0.0859 | -0.0337 | 12.9 | 20.27 | 863 | -- | -- |
| 14.53 | 0.178 | 11.5 | -0.39 | 0.408 | -0.714 | -- | -- | -0.0324 | 12.9 | 20.24 | 888 | -- | -- |
| 18.14 | 0.198 | 11.5 | -0.418 | -- | -0.762 | -- | 0.253 | -0.0855 | -- | 52.45 | 2 | -- | -- |
| 18.19 | 0.2 | 11.5 | -0.241 | 0.359 | -- | 0.262 | -- | 0.0311 | 13 | -- | -- | -- | -- |
| 18.48 | 0.201 | 11.5 | -0.232 | 0.358 | -- | -- | -- | 0.0326 | 13.1 | -- | -- | -- | -- |
| 18.19 | 0.199 | 11.5 | -0.383 | -- | -0.757 | -- | -- | -0.0759 | -- | 64.28 | 2 | -- | -- |
| 17.97 | 0.197 | 11.5 | -- | 0.403 | -0.368 | -- | -- | 0.0102 | 13 | 23 | 897 | -- | -- |
| 26.46 | 0.24 | 11.5 | -0.245 | -- | -- | -- | -- | 0.0255 | -- | -- | -- | -- | -- |
| 19.89 | 0.209 | 11.5 | -- | 0.362 | -- | -- | -- | 0.0584 | 13.1 | -- | -- | -- | -- |
| 21.84 | 0.218 | 11.5 | -- | -- | -0.637 | -- | -- | -0.0198 | -- | 63.62 | 2 | -- | -- |
| 28.04 | 0.247 | 11.5 | -- | -- | -- | -- | -- | 0.0527 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.64 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 16 | 13.13 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 17 | 13.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 28 | 13.28 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 67 | 13.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 16 |
| 73 | 13.52 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 97 | 13.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 123 | 13.64 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 126 | 13.64 | temperature | 10 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 147 | 13.69 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 18 |
| 167 | 13.73 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 12 | 20 |
| 184 | 13.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 209 | 13.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 264 | 13.85 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 381 | 14.01 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 10 |
| 402 | 14.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 439 | 14.08 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 15 |
| 512 | 14.14 | temperature | 20 | 720 | < th | dose dependent | rect. | 22 | 8 |
| 522 | 14.14 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 536 | 14.16 | temperature | 20 | 720 | < th | dose dependent | sin | 9 | NA |
| 565 | 14.17 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 9 | 20 |
| 587 | 14.19 | temperature | 20 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 598 | 14.19 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 605 | 14.20 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 9 | 18 |
| 688 | 14.25 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 12 |
| 704 | 14.25 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 735 | 14.27 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 911 | 14.36 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 932 | 14.37 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 3 | 15 |
| 992 | 14.40 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 2 | 17 |
| 993 | 14.40 | temperature | 15 | 270 | > th | dose dependent | sin | 22 | NA |