BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0480100 Os08g0480100|AK101591
(624 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0480100 Longin-like domain containing protein 1117 0.0
Os11g0153700 Similar to Signal recognition particle 54 kDa ... 139 8e-33
Os05g0509500 Similar to Signal recognition particle 54 kDa ... 135 9e-32
Os01g0772800 Similar to Signal recognition particle 54 kDa ... 134 2e-31
Os01g0958100 Similar to Chloroplast SRP receptor cpFtsY pre... 106 5e-23
>Os08g0480100 Longin-like domain containing protein
Length = 624
Score = 1117 bits (2890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/624 (89%), Positives = 556/624 (89%)
Query: 1 MLEELLIFTRGGLILWSSCRALGGAALKGSPIDALIRSCLLEERSADASFSQDTYALKWT 60
MLEELLIFTRGGLILWSSCRALGGAALKGSPIDALIRSCLLEERSADASFSQDTYALKWT
Sbjct: 1 MLEELLIFTRGGLILWSSCRALGGAALKGSPIDALIRSCLLEERSADASFSQDTYALKWT 60
Query: 61 FNNDLGLVFVAVYQRMLHLLYVDDLLAAVRKEFSQIYDPKRTSYDDAFNEVFRQLHLEAE 120
FNNDLGLVFVAVYQRMLHLLYVDDLLAAVRKEFSQIYDPKRTSYDDAFNEVFRQLHLEAE
Sbjct: 61 FNNDLGLVFVAVYQRMLHLLYVDDLLAAVRKEFSQIYDPKRTSYDDAFNEVFRQLHLEAE 120
Query: 121 ARSEEMKKNKQVTGSRPTKVTTKTNRGDTQXXXXXXXXXXXXXXXXXXXXXXEHTLPNGN 180
ARSEEMKKNKQVTGSRPTKVTTKTNRGDTQ EHTLPNGN
Sbjct: 121 ARSEEMKKNKQVTGSRPTKVTTKTNRGDTQGSGGGRKKGDSGKDDSDGDSGKEHTLPNGN 180
Query: 181 SKMQENSLKDNSHARSVVVKGKENGDPNDGAFDVNKLQKMRNKGNKKNEVASXXXXXXXX 240
SKMQENSLKDNSHARSVVVKGKENGDPNDGAFDVNKLQKMRNKGNKKNEVAS
Sbjct: 181 SKMQENSLKDNSHARSVVVKGKENGDPNDGAFDVNKLQKMRNKGNKKNEVASNVAKNTSK 240
Query: 241 XXXXXXXXXXRVWDDTPDDKKKLDFTDPADERGDEVIDQVVVKQGXXXXXXXXXXXXXXX 300
RVWDDTPDDKKKLDFTDPADERGDEVIDQVVVKQG
Sbjct: 241 ANTKKNLKKNRVWDDTPDDKKKLDFTDPADERGDEVIDQVVVKQGESMMDKDDVVSSDSD 300
Query: 301 XXXXXXXXXXXXXQKKKGWFSSMFKSIAGNNVLEKSDIQPALKALKDRLMTKNVAEEIAE 360
QKKKGWFSSMFKSIAGNNVLEKSDIQPALKALKDRLMTKNVAEEIAE
Sbjct: 301 EEEEDGEENSGASQKKKGWFSSMFKSIAGNNVLEKSDIQPALKALKDRLMTKNVAEEIAE 360
Query: 361 KLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVHAAKERGKPYV 420
KLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVHAAKERGKPYV
Sbjct: 361 KLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVHAAKERGKPYV 420
Query: 421 IVFVGVNGVGKSTNLAKVAYWLLQHNLSVSLAACDTFRSGAVEQLRTHARRLQIPIFEKG 480
IVFVGVNGVGKSTNLAKVAYWLLQHNLSVSLAACDTFRSGAVEQLRTHARRLQIPIFEKG
Sbjct: 421 IVFVGVNGVGKSTNLAKVAYWLLQHNLSVSLAACDTFRSGAVEQLRTHARRLQIPIFEKG 480
Query: 481 YEKDPAVVAKEAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSKLINLNSPDLVLFVGEA 540
YEKDPAVVAKEAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSKLINLNSPDLVLFVGEA
Sbjct: 481 YEKDPAVVAKEAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSKLINLNSPDLVLFVGEA 540
Query: 541 LVGNDAVDQLTKFNQKLADLSAVPTTRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMF 600
LVGNDAVDQLTKFNQKLADLSAVPTTRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMF
Sbjct: 541 LVGNDAVDQLTKFNQKLADLSAVPTTRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMF 600
Query: 601 VGCGQSYTDLKKLNVKSIVKTLLK 624
VGCGQSYTDLKKLNVKSIVKTLLK
Sbjct: 601 VGCGQSYTDLKKLNVKSIVKTLLK 624
>Os11g0153700 Similar to Signal recognition particle 54 kDa protein, chloroplast
precursor (SRP54) (54 chloroplast protein) (54CP) (FFC)
Length = 557
Score = 139 bits (349), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 158/304 (51%), Gaps = 18/304 (5%)
Query: 320 FSSMFKSIAGNNVLEKSDIQPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLGSFT 379
S + + G + L K +I ++ ++ L+ +V+ + ESV G +
Sbjct: 84 LESAWNKLRGTDQLTKDNIAEPMRDIRRALLEADVSLPVVRSFIESVTEKAVGTDVIRGV 143
Query: 380 RISSTVQTAMEEALLRILTPRRSIDILRDVHAAKERGKPYVIVFVGVNGVGKSTNLAKVA 439
+ + + + L++++ S D+ AK P VI+ G+ GVGK+T AK+A
Sbjct: 144 KPEQQLVKVVNDELVQLMGGEVS-----DLVFAKT--APTVILLAGLQGVGKTTVCAKLA 196
Query: 440 YWLLQHNLSVSLAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRN 499
Y+L + S L A D +R A++QL +++ +P++ +G E P+ +AK I+EA
Sbjct: 197 YYLKKMGKSCMLIAADVYRPAAIDQLTILGKQVGVPVYSEGTEAKPSQIAKNGIKEAKSK 256
Query: 500 KSDVVLVDTAGRMQDNEPLMRALSKLINLNSPDLVLFVGEALVGNDAVDQLTKFNQKLAD 559
K+DV++VDTAGR+Q ++ +M L ++ +P VL V +A+ G +A ++ FN ++
Sbjct: 257 KTDVIIVDTAGRLQVDKAMMSELKEVKRAVNPTEVLLVVDAMTGQEAASLVSTFNVEIG- 315
Query: 560 LSAVPTTRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIV 619
I G +LTK D D + GAALS+ +SG P+ FVG G+ DL+ +
Sbjct: 316 ---------ITGAILTKLDG-DSRGGAALSIKEVSGKPIKFVGRGERMEDLEPFYPDRMA 365
Query: 620 KTLL 623
+ +L
Sbjct: 366 QRIL 369
>Os05g0509500 Similar to Signal recognition particle 54 kDa protein 2 (SRP54)
Length = 483
Score = 135 bits (340), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 114/209 (54%), Gaps = 11/209 (5%)
Query: 415 RGKPYVIVFVGVNGVGKSTNLAKVAYWLLQHNLSVSLAACDTFRSGAVEQLRTHARRLQI 474
+GKP V++FVG+ G GK+T K A++ SL DTFR+GA +QL+ +A + +I
Sbjct: 98 KGKPSVVMFVGLQGSGKTTTCTKYAHYHQLKGFKPSLVCADTFRAGAFDQLKQNATKAKI 157
Query: 475 PIFEKGYEKDPAVVAKEAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSKLINLNSPDLV 534
P + E DP +A E ++ + KSD+++VDT+GR + L + ++ PDLV
Sbjct: 158 PYYGSYMESDPVKIAVEGVERFRKEKSDLIIVDTSGRHKQEAALFEEMRQVAEATKPDLV 217
Query: 535 LFVGEALVGNDAVDQLTKFNQKLADLSAVPTTRLIDGILLTKFDTIDDKVGAALSMVYIS 594
+FV + +G A DQ F Q A + AV T+L DG K G ALS V +
Sbjct: 218 IFVMDGSIGQAAFDQAQAFKQS-ASVGAVIVTKL-DG---------HAKGGGALSAVAAT 266
Query: 595 GAPVMFVGCGQSYTDLKKLNVKSIVKTLL 623
+PV+F+G G+ D + +VK V LL
Sbjct: 267 KSPVVFIGTGEHMQDFEVFDVKPFVSRLL 295
>Os01g0772800 Similar to Signal recognition particle 54 kDa protein 2 (SRP54)
Length = 496
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 149/306 (48%), Gaps = 18/306 (5%)
Query: 318 GWFSSMFKSIAGNNVLEKSDIQPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLGS 377
G S ++ V+++ + L + L+ +V ++ + ++ + + L +
Sbjct: 8 GSISRALAQMSNATVIDEKVLSDCLNEISRALLQSDVQFKMVRDMQSNIKRIVNLETLAA 67
Query: 378 FTRISSTVQTAMEEALLRILTPRRSIDILRDVHAAKERGKPYVIVFVGVNGVGKSTNLAK 437
T +Q A+ L +L P + ++GKP V++FVG+ G GK+T K
Sbjct: 68 GTNKRRIIQQAVFTELCNMLDPGKP-------SFTPKKGKPCVVMFVGLQGSGKTTTCTK 120
Query: 438 VAYWLLQHNLSVSLAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEAT 497
AY+ + +L DTFR+GA +QL+ +A + +IP + E DP +A E ++
Sbjct: 121 YAYYHQRKGFKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFK 180
Query: 498 RNKSDVVLVDTAGRMQDNEPLMRALSKLINLNSPDLVLFVGEALVGNDAVDQLTKFNQKL 557
+ D+++VDT+GR + L + ++ PDLV+FV ++ +G A DQ F Q +
Sbjct: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
Query: 558 ADLSAVPTTRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKS 617
+ + +++TK D K G ALS V + +PV+F+G G+ + + +VK
Sbjct: 241 S----------VGAVIVTKMDG-HAKGGGALSAVAATKSPVIFIGTGEHIDEFEVFDVKP 289
Query: 618 IVKTLL 623
V LL
Sbjct: 290 FVSRLL 295
>Os01g0958100 Similar to Chloroplast SRP receptor cpFtsY precursor
Length = 347
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 142/295 (48%), Gaps = 27/295 (9%)
Query: 336 SDIQPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLR 395
+D L L++ L+ + +I+ ++ +++ + KL S + ++ A++ +L
Sbjct: 72 ADTDRVLDELEEALLVSDFGPKISFRIVDTLREEIRDGKLKS----GAEIKEALKRCILE 127
Query: 396 ILTPRRSIDILRDVHAAKERGKPYVIVFVGVNGVGKSTNLAKVAYWLLQHNLSVSLAACD 455
+LT + L+ KP VI+ VGVNG GK+T+L K+AY + V +AA D
Sbjct: 128 LLTSKGGNPELQLGFR-----KPAVIMIVGVNGGGKTTSLGKLAYRFKNEGVKVLMAAGD 182
Query: 456 TFRSGAVEQLRTHARRLQIPI-FEKGYEKDPAVVAKEAIQEATRNKSDVVLVDTAGRMQD 514
TFR+ A +QL A R I + + PA V +A++ R D+VL DT+GR+
Sbjct: 183 TFRAAARDQLEVWAERTGSEIVIDNDKKAKPASVLSQAVKRGKREGFDLVLCDTSGRLHT 242
Query: 515 NEPLMRALSKLINL------NSPDLVLFVGEALVGNDAVDQLTKFNQKLADLSAVPTTRL 568
N LM L + +P+ +L V + G + + Q +FN +
Sbjct: 243 NYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAREFNDVVG---------- 292
Query: 569 IDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 623
+ G +LTK D + G +S+V G PV F+G G+ DL+ + ++ V+ +
Sbjct: 293 VTGFVLTKLDGT-ARGGCVVSVVDELGIPVKFIGVGEGMEDLQPFDAEAFVEAIF 346
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,539,388
Number of extensions: 640377
Number of successful extensions: 1761
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1753
Number of HSP's successfully gapped: 5
Length of query: 624
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 517
Effective length of database: 11,448,903
Effective search space: 5919082851
Effective search space used: 5919082851
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)