Os01g0958100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chloroplast SRP receptor cpFtsY precursor.
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Os01g0958100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chloroplast SRP receptor cpFtsY precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63 | 0.373 | 11.1 | -1.95 | 0.686 | 0.791 | 0.32 | -1.58 | -0.938 | 22.4 | 25.67 | 83 | -- | -- |
| 63.84 | 0.372 | 11.1 | -1.79 | 0.693 | 0.652 | 0.429 | -- | -0.9 | 22.2 | 25.6 | 64 | -- | -- |
| 63.39 | 0.371 | 11.1 | -1.98 | 0.688 | 0.802 | -- | -1.8 | -0.935 | 22.3 | 25.9 | 78 | -- | -- |
| 64.45 | 0.374 | 11.1 | -1.79 | 0.674 | 0.641 | -- | -- | -0.898 | 22.3 | 25.59 | 84 | -- | -- |
| 79.91 | 0.416 | 11.1 | -2.06 | -- | 0.877 | -- | -1.34 | -0.995 | -- | 24.5 | 647 | -- | -- |
| 70.58 | 0.394 | 11.1 | -1.68 | 0.68 | -- | 0.37 | -- | -0.863 | 20.9 | -- | -- | -- | -- |
| 71.04 | 0.395 | 11.1 | -1.69 | 0.679 | -- | -- | -- | -0.863 | 20.8 | -- | -- | -- | -- |
| 80.57 | 0.418 | 11.1 | -1.86 | -- | 0.751 | -- | -- | -0.936 | -- | 24.5 | 659 | -- | -- |
| 145.1 | 0.564 | 11 | -- | 0.683 | 0.264 | -- | -- | -0.675 | 21.1 | 26.9 | 42 | -- | -- |
| 97.3 | 0.461 | 11 | -1.69 | -- | -- | -- | -- | -0.868 | -- | -- | -- | -- | -- |
| 146.1 | 0.565 | 11 | -- | 0.684 | -- | -- | -- | -0.675 | 20.7 | -- | -- | -- | -- |
| 166.42 | 0.601 | 11 | -- | -- | 0.451 | -- | -- | -0.706 | -- | 24.9 | 549 | -- | -- |
| 172.46 | 0.613 | 11 | -- | -- | -- | -- | -- | -0.681 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.32 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 9 |
| 3 | 61.52 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 20 |
| 11 | 61.81 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 15 | 61.87 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 35 | 62.07 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 54 | 62.19 | temperature | 25 | 90 | > th | dose dependent | sin | 0 | NA |
| 65 | 62.24 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 19 |
| 80 | 62.35 | temperature | 25 | 270 | > th | dose dependent | sin | 4 | NA |
| 166 | 62.74 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 13 |
| 226 | 63.07 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 256 | 63.19 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 267 | 63.21 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 331 | 63.44 | humidity | 90 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 376 | 63.58 | wind | 3 | 1440 | < th | dose dependent | rect. | 3 | 4 |
| 411 | 63.71 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 460 | 63.83 | temperature | 10 | 90 | > th | dose dependent | rect. | 9 | 19 |
| 504 | 63.96 | wind | 5 | 1440 | < th | dose dependent | rect. | 5 | 2 |
| 526 | 64.01 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 3 |
| 567 | 64.08 | temperature | 30 | 90 | < th | dose independent | rect. | 4 | 19 |
| 578 | 64.10 | humidity | 80 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 590 | 64.11 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 597 | 64.13 | wind | 1 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 608 | 64.16 | wind | 9 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 613 | 64.17 | wind | 1 | 1440 | > th | dose dependent | rect. | 3 | 4 |
| 635 | 64.21 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 16 |
| 638 | 64.22 | wind | 3 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 645 | 64.23 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 649 | 64.24 | humidity | 90 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 693 | 64.31 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 5 | 18 |
| 738 | 64.40 | temperature | 25 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 766 | 64.47 | wind | 3 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 817 | 64.55 | humidity | 90 | 1440 | > th | dose independent | rect. | 20 | 2 |
| 835 | 64.58 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 7 | 23 |
| 985 | 64.81 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 9 |