Os05g0509500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Signal recognition particle 54 kDa protein 2 (SRP54).
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Os05g0509500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Signal recognition particle 54 kDa protein 2 (SRP54).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 362.22 | 0.894 | 7.56 | 7.29 | 0.872 | -3.26 | -0.306 | 5.54 | 1.98 | 22.1 | 24.15 | 1293 | -- | -- |
| 360.78 | 0.885 | 7.67 | 6.14 | 0.781 | -2.67 | -0.0189 | -- | 1.99 | 21.2 | 22.34 | 6940 | -- | -- |
| 360.47 | 0.884 | 7.56 | 7.16 | 0.79 | -3.05 | -- | 4.52 | 2.08 | 21.6 | 23.03 | 1350 | -- | -- |
| 360.56 | 0.884 | 7.65 | 6.18 | 0.775 | -2.71 | -- | -- | 2 | 21.2 | 22.19 | 6939 | -- | -- |
| 393.68 | 0.924 | 7.53 | 7.17 | -- | -2.97 | -- | 4.29 | 2.08 | -- | 22.97 | 1429 | -- | -- |
| 634.78 | 1.18 | 7.84 | 4.91 | 0.731 | -- | 0.0861 | -- | 1.16 | 20 | -- | -- | -- | -- |
| 634.8 | 1.18 | 7.84 | 4.91 | 0.731 | -- | -- | -- | 1.16 | 20 | -- | -- | -- | -- |
| 390.05 | 0.92 | 7.56 | 6.41 | -- | -2.87 | -- | -- | 2.29 | -- | 21.25 | 8636 | -- | -- |
| 1182.9 | 1.6 | 8.01 | -- | 0.729 | -1.31 | -- | -- | 0.425 | 21.3 | 28.6 | 1381 | -- | -- |
| 664.01 | 1.2 | 7.82 | 4.9 | -- | -- | -- | -- | 1.15 | -- | -- | -- | -- | -- |
| 1270.06 | 1.67 | 7.96 | -- | 0.706 | -- | -- | -- | 0.612 | 20.5 | -- | -- | -- | -- |
| 1215.27 | 1.62 | 7.98 | -- | -- | -1.25 | -- | -- | 0.435 | -- | 28.5 | 1402 | -- | -- |
| 1298 | 1.68 | 7.94 | -- | -- | -- | -- | -- | 0.606 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 351.15 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 2 | 351.27 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 3 | 351.27 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 4 | 351.57 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 5 | 352.27 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 7 | 354.41 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 8 | 354.52 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 3 | 13 |
| 12 | 355.74 | wind | 5.0 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 13 | 355.77 | wind | 5.0 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 14 | 356.01 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 17 | 356.42 | wind | 5.0 | 43200 | < th | dose independent | rect. | 19 | 22 |
| 19 | 356.59 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 20 | 356.96 | wind | 5.0 | 43200 | < th | dose independent | rect. | 3 | 14 |
| 24 | 357.10 | wind | 5.0 | 43200 | > th | dose independent | rect. | 3 | 14 |
| 26 | 357.56 | wind | 5.0 | 43200 | > th | dose independent | rect. | 3 | 19 |
| 28 | 357.68 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 39 | 358.16 | wind | 5.0 | 43200 | > th | dose independent | rect. | 19 | 22 |
| 41 | 358.24 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 19 | 21 |
| 42 | 358.27 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 47 | 358.46 | wind | 5.0 | 43200 | < th | dose independent | sin | 2 | NA |
| 58 | 358.79 | wind | 5.0 | 43200 | > th | dose independent | sin | 2 | NA |
| 59 | 358.86 | wind | 3.0 | 43200 | > th | dose dependent | sin | 3 | NA |
| 63 | 359.06 | wind | 5.0 | 43200 | < th | dose independent | rect. | 2 | 20 |
| 71 | 359.33 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 7 | 12 |
| 74 | 359.41 | wind | 5.0 | 43200 | < th | dose independent | rect. | 24 | 22 |
| 80 | 359.53 | wind | 5.0 | 43200 | < th | dose independent | rect. | 14 | 23 |
| 81 | 359.54 | wind | 5.0 | 43200 | > th | dose independent | rect. | 14 | 23 |
| 83 | 359.58 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 89 | 359.77 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 115 | 360.45 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 3 | 19 |
| 153 | 361.17 | wind | 5.0 | 43200 | > th | dose independent | no | NA | NA |
| 171 | 361.49 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 22 | NA |
| 188 | 361.72 | wind | 5.0 | 43200 | < th | dose independent | no | NA | NA |
| 212 | 362.12 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 235 | 362.48 | wind | 5.0 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 276 | 363.11 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 314 | 363.61 | wind | 5.0 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 317 | 363.66 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 318 | 363.68 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 321 | 363.72 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 363 | 364.26 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 405 | 364.85 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 9 | 23 |
| 432 | 365.20 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 445 | 365.39 | wind | 5.0 | 43200 | > th | dose dependent | no | NA | NA |
| 654 | 367.01 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 673 | 367.09 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 14 | 23 |
| 689 | 367.14 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 718 | 367.31 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 736 | 367.41 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 780 | 367.75 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 794 | 367.90 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 807 | 368.00 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 917 | 368.75 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 3 | 12 |