Os01g0772800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Signal recognition particle 54 kDa protein 2 (SRP54).
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Os01g0772800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Signal recognition particle 54 kDa protein 2 (SRP54).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8.03 | 0.133 | 11.4 | 0.419 | 0.0061 | -0.192 | -0.519 | -0.652 | 0.025 | 5.31 | 20.14 | 1070 | -- | -- |
| 8.34 | 0.135 | 11.3 | 0.575 | 0.0274 | -0.246 | 0.513 | -- | 0.0649 | 17.3 | 21.38 | 962 | -- | -- |
| 8.64 | 0.137 | 11.4 | 0.389 | 0.0187 | -0.18 | -- | -0.717 | 0.0207 | 7.72 | 20.1 | 1288 | -- | -- |
| 8.86 | 0.139 | 11.3 | 0.602 | 0.0117 | -0.241 | -- | -- | 0.068 | 22.4 | 23.65 | 1106 | -- | -- |
| 8.65 | 0.137 | 11.4 | 0.388 | -- | -0.182 | -- | -0.718 | 0.0202 | -- | 20.09 | 1250 | -- | -- |
| 9.87 | 0.147 | 11.4 | 0.513 | 0.0113 | -- | 0.536 | -- | 0.0248 | 16.4 | -- | -- | -- | -- |
| 10.59 | 0.152 | 11.3 | 0.518 | 0.033 | -- | -- | -- | 0.0277 | 11.9 | -- | -- | -- | -- |
| 8.86 | 0.139 | 11.3 | 0.59 | -- | -0.231 | -- | -- | 0.0678 | -- | 23.5 | 1159 | -- | -- |
| 17.15 | 0.193 | 11.4 | -- | 0.0107 | -0.104 | -- | -- | -0.0511 | 11.4 | 30.5 | 1092 | -- | -- |
| 10.66 | 0.153 | 11.3 | 0.517 | -- | -- | -- | -- | 0.0273 | -- | -- | -- | -- | -- |
| 17.65 | 0.197 | 11.4 | -- | 0.0276 | -- | -- | -- | -0.0299 | 10.8 | -- | -- | -- | -- |
| 17.16 | 0.193 | 11.4 | -- | -- | -0.106 | -- | -- | -0.0519 | -- | 30.48 | 1091 | -- | -- |
| 17.7 | 0.196 | 11.4 | -- | -- | -- | -- | -- | -0.0301 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 7.76 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 2 | 7.78 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 4 | 7.82 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 6 | 7.84 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 7 | 7.84 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 8 | 7.85 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 21 | 2 |
| 9 | 7.85 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 16 | 6 |
| 11 | 7.86 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 13 | 7.86 | wind | 9.0 | 43200 | > th | dose independent | rect. | 16 | 6 |
| 21 | 7.88 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 22 | 7.88 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 31 | 7.88 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 16 | 14 |
| 47 | 7.91 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 51 | 7.91 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 86 | 7.93 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 106 | 7.94 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 14 |
| 113 | 7.95 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 114 | 7.95 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 144 | 7.96 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 12 | NA |
| 147 | 7.96 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 180 | 7.97 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 10 | NA |
| 187 | 7.97 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 205 | 7.98 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 206 | 7.98 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 221 | 7.98 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 222 | 7.98 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 230 | 7.98 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 21 | 4 |
| 335 | 8.00 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 3 | 5 |
| 443 | 8.02 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 10 |
| 447 | 8.02 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 448 | 8.02 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 513 | 8.03 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 636 | 8.05 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 702 | 8.06 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 703 | 8.06 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 713 | 8.06 | temperature | 20.0 | 1440 | > th | dose dependent | no | NA | NA |
| 826 | 8.07 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 861 | 8.08 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 907 | 8.08 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 910 | 8.08 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 933 | 8.09 | temperature | 30.0 | 4320 | < th | dose dependent | sin | 12 | NA |
| 965 | 8.09 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 7 |