BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0772800 Os01g0772800|AK120871
(496 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0772800 Similar to Signal recognition particle 54 kDa ... 962 0.0
Os05g0509500 Similar to Signal recognition particle 54 kDa ... 772 0.0
Os11g0153700 Similar to Signal recognition particle 54 kDa ... 209 3e-54
Os01g0958100 Similar to Chloroplast SRP receptor cpFtsY pre... 123 3e-28
Os08g0480100 Longin-like domain containing protein 121 1e-27
>Os01g0772800 Similar to Signal recognition particle 54 kDa protein 2 (SRP54)
Length = 496
Score = 962 bits (2488), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/479 (97%), Positives = 467/479 (97%)
Query: 1 MVLAQLGGSISRALAQMSNATVIDEKVLSDCLNEISRALLQSDVQFKMVRDMQSNIKRIV 60
MVLAQLGGSISRALAQMSNATVIDEKVLSDCLNEISRALLQSDVQFKMVRDMQSNIKRIV
Sbjct: 1 MVLAQLGGSISRALAQMSNATVIDEKVLSDCLNEISRALLQSDVQFKMVRDMQSNIKRIV 60
Query: 61 NLETLAAGTNKRRIIQQAVFTELCNMLDPGKPSFTPKKGKPCVVMFVGLQGSGKTTTCTK 120
NLETLAAGTNKRRIIQQAVFTELCNMLDPGKPSFTPKKGKPCVVMFVGLQGSGKTTTCTK
Sbjct: 61 NLETLAAGTNKRRIIQQAVFTELCNMLDPGKPSFTPKKGKPCVVMFVGLQGSGKTTTCTK 120
Query: 121 YAYYHQRKGFKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFK 180
YAYYHQRKGFKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFK
Sbjct: 121 YAYYHQRKGFKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGXXXXXXXXXXXXSV 240
KENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIG SV
Sbjct: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHIDEFEVFDVKPFVSRLLGMGDW 300
SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHIDEFEVFDVKPFVSRLLGMGDW
Sbjct: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHIDEFEVFDVKPFVSRLLGMGDW 300
Query: 301 SGFMDKIHEVVPTDQQPELLQKLSEGTFTLRLMYEQFQNILKMGPIGQVFSMLPGFSSEL 360
SGFMDKIHEVVPTDQQPELLQKLSEGTFTLRLMYEQFQNILKMGPIGQVFSMLPGFSSEL
Sbjct: 301 SGFMDKIHEVVPTDQQPELLQKLSEGTFTLRLMYEQFQNILKMGPIGQVFSMLPGFSSEL 360
Query: 361 MPKGHEKESQAKIKRYMTMMDSMTDGELDSTNPKLMTESRILRIARGSGRPVRDVVDMLE 420
MPKGHEKESQAKIKRYMTMMDSMTDGELDSTNPKLMTESRILRIARGSGRPVRDVVDMLE
Sbjct: 361 MPKGHEKESQAKIKRYMTMMDSMTDGELDSTNPKLMTESRILRIARGSGRPVRDVVDMLE 420
Query: 421 EYKRLAKIWSKMKGLKIPKKGEMSALSRNMNVQHMSKVLPPQMLKQIGGMGGLQSLMKQ 479
EYKRLAKIWSKMKGLKIPKKGEMSALSRNMNVQHMSKVLPPQMLKQIGGMGGLQSLMKQ
Sbjct: 421 EYKRLAKIWSKMKGLKIPKKGEMSALSRNMNVQHMSKVLPPQMLKQIGGMGGLQSLMKQ 479
>Os05g0509500 Similar to Signal recognition particle 54 kDa protein 2 (SRP54)
Length = 483
Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/479 (76%), Positives = 418/479 (87%), Gaps = 1/479 (0%)
Query: 1 MVLAQLGGSISRALAQMSNATVIDEKVLSDCLNEISRALLQSDVQFKMVRDMQSNIKRIV 60
MVLAQLGGSISRALAQMSNATVID+K +DCL+EI+RALLQSDVQ +MV DM++NI+R V
Sbjct: 1 MVLAQLGGSISRALAQMSNATVIDDKAFADCLHEIARALLQSDVQIRMVSDMRANIRRAV 60
Query: 61 NLETLAAGTNKRRIIQQAVFTELCNMLDPGKPSFTPKKGKPCVVMFVGLQGSGKTTTCTK 120
NL+ L AGTNKRRIIQQAVF ELCNMLDPGKPSFTP KGKP VVMFVGLQGSGKTTTCTK
Sbjct: 61 NLDALPAGTNKRRIIQQAVFAELCNMLDPGKPSFTPTKGKPSVVMFVGLQGSGKTTTCTK 120
Query: 121 YAYYHQRKGFKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFK 180
YA+YHQ KGFKP+LVCADTFRAGAFDQLKQNATKAKIP+YGSYMESDPVKIAVEGVERF+
Sbjct: 121 YAHYHQLKGFKPSLVCADTFRAGAFDQLKQNATKAKIPYYGSYMESDPVKIAVEGVERFR 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGXXXXXXXXXXXXSV 240
KE DLIIVDTSGRHKQEAALFEEMRQV+EATKPDLVIFVMD SIG S
Sbjct: 181 KEKSDLIIVDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDGSIGQAAFDQAQAFKQSA 240
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHIDEFEVFDVKPFVSRLLGMGDW 300
SVGAVIVTK+DGHAKGGGALSAVAATKSPV+FIGTGEH+ +FEVFDVKPFVSRLLGMGD
Sbjct: 241 SVGAVIVTKLDGHAKGGGALSAVAATKSPVVFIGTGEHMQDFEVFDVKPFVSRLLGMGDL 300
Query: 301 SGFMDKIHEVVPTDQQPELLQKLSEGTFTLRLMYEQFQNILKMGPIGQVFSMLPGFSSEL 360
SG ++KI + +P DQQPEL+Q+L EGTFTLR+ YE FQN+L MGPIGQV SM+PGF SEL
Sbjct: 301 SGLVNKIKDAMPADQQPELMQRLIEGTFTLRVFYELFQNLLNMGPIGQVLSMIPGFRSEL 360
Query: 361 MPKGHEKESQAKIKRYMTMMDSMTDGELDSTNPKLMTESRILRIARGSGRPVRDVVDMLE 420
MPKGH+KESQAKIKRYMT+MDSMT+ ELDSTNPKLM+ESRI R+ARGSGR ++DV DMLE
Sbjct: 361 MPKGHDKESQAKIKRYMTIMDSMTNAELDSTNPKLMSESRIKRVARGSGRTMKDVTDMLE 420
Query: 421 EYKRLAKIWSKMKGLKIPKKGEMSALSRNMNVQHMSKVLPPQMLKQIGGMGGLQSLMKQ 479
EYKR+AK+ SK+K K+PK + + ++ + ++ ++P Q+L QIGG+ LQS+MKQ
Sbjct: 421 EYKRIAKVCSKLKK-KLPKNMDRNVMNNKDTLNTINNLIPKQLLNQIGGVNPLQSVMKQ 478
>Os11g0153700 Similar to Signal recognition particle 54 kDa protein, chloroplast
precursor (SRP54) (54 chloroplast protein) (54CP) (FFC)
Length = 557
Score = 209 bits (533), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 129/436 (29%), Positives = 223/436 (51%), Gaps = 8/436 (1%)
Query: 2 VLAQLGGSISRALAQMSNATVIDEKVLSDCLNEISRALLQSDVQFKMVRD-MQSNIKRIV 60
+ QL + A ++ + + +++ + +I RALL++DV +VR ++S ++ V
Sbjct: 76 MFGQLTTGLESAWNKLRGTDQLTKDNIAEPMRDIRRALLEADVSLPVVRSFIESVTEKAV 135
Query: 61 NLETLAAGTNKRRIIQQAVFTELCNMLDPGKPSFTPKKGKPCVVMFVGLQGSGKTTTCTK 120
+ + G + + + V EL ++ K P V++ GLQG GKTT C K
Sbjct: 136 GTDVIR-GVKPEQQLVKVVNDELVQLMGGEVSDLVFAKTAPTVILLAGLQGVGKTTVCAK 194
Query: 121 YAYYHQRKGFKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFK 180
AYY ++ G L+ AD +R A DQL + +P Y E+ P +IA G++ K
Sbjct: 195 LAYYLKKMGKSCMLIAADVYRPAAIDQLTILGKQVGVPVYSEGTEAKPSQIAKNGIKEAK 254
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGXXXXXXXXXXXXSV 240
+ D+IIVDT+GR + + A+ E+++V A P V+ V+D+ G +
Sbjct: 255 SKKTDVIIVDTAGRLQVDKAMMSELKEVKRAVNPTEVLLVVDAMTGQEAASLVSTFNVEI 314
Query: 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHIDEFEVFDVKPFVSRLLGMGDW 300
+ I+TK+DG ++GG ALS + P+ F+G GE +++ E F R+LGMGD
Sbjct: 315 GITGAILTKLDGDSRGGAALSIKEVSGKPIKFVGRGERMEDLEPFYPDRMAQRILGMGDV 374
Query: 301 SGFMDKIHEVVPTDQQPELLQKLSEGTFTLRLMYEQFQNILKMGPIGQVFSMLPGFSSEL 360
F++K EV+ + EL +K+ F +Q Q I +MG ++ M+PG +++
Sbjct: 375 LSFVEKAQEVMRQEDAEELQKKILSAKFNFNDFLKQTQAIAQMGSFSRIIGMIPGM-NKV 433
Query: 361 MPKGHEKESQAKIKRYMTMMDSMTDGELDSTNPKLMTES--RILRIARGSGRPVRDVVDM 418
P +E++ +K +M++ MT E + P+L+ ES R +R+A+ SG+ R V +
Sbjct: 434 TP-AQIREAEKNLKFMESMINVMTPEERE--RPELLAESRERRIRVAKESGKNERQVSQL 490
Query: 419 LEEYKRLAKIWSKMKG 434
+ + R+ KM G
Sbjct: 491 VAQLFRMRAQMQKMMG 506
>Os01g0958100 Similar to Chloroplast SRP receptor cpFtsY precursor
Length = 347
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 146/298 (48%), Gaps = 34/298 (11%)
Query: 21 TVIDEKV----LSD---CLNEISRALLQSD----VQFKMVRDMQSNIKRIVNLETLAAGT 69
+V+DE + L+D L+E+ ALL SD + F++V ++ I+ L +G
Sbjct: 60 SVVDELLTYWNLADTDRVLDELEEALLVSDFGPKISFRIVDTLREEIRD----GKLKSGA 115
Query: 70 NKRRIIQQAVFTELCNMLDPGKPSFTPKKGKPCVVMFVGLQGSGKTTTCTKYAYYHQRKG 129
+ +++ + L + G P KP V+M VG+ G GKTT+ K AY + +G
Sbjct: 116 EIKEALKRCILELLTS--KGGNPELQLGFRKPAVIMIVGVNGGGKTTSLGKLAYRFKNEG 173
Query: 130 FKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESD------PVKIAVEGVERFKKEN 183
K + DTFRA A DQL+ A + GS + D P + + V+R K+E
Sbjct: 174 VKVLMAAGDTFRAAARDQLEVWAERT-----GSEIVIDNDKKAKPASVLSQAVKRGKREG 228
Query: 184 CDLIIVDTSGRHKQEAALFEEM----RQVSEAT--KPDLVIFVMDSSIGXXXXXXXXXXX 237
DL++ DTSGR L EE+ + +++A P+ ++ V+D + G
Sbjct: 229 FDLVLCDTSGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAREFN 288
Query: 238 XSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHIDEFEVFDVKPFVSRLL 295
V V ++TK+DG A+GG +S V PV FIG GE +++ + FD + FV +
Sbjct: 289 DVVGVTGFVLTKLDGTARGGCVVSVVDELGIPVKFIGVGEGMEDLQPFDAEAFVEAIF 346
>Os08g0480100 Longin-like domain containing protein
Length = 624
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 144/306 (47%), Gaps = 18/306 (5%)
Query: 8 GSISRALAQMSNATVIDEKVLSDCLNEISRALLQSDVQFKMVRDMQSNIKRIVNLETLAA 67
G S ++ V+++ + L + L+ +V ++ + ++ + + L +
Sbjct: 318 GWFSSMFKSIAGNNVLEKSDIQPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLGS 377
Query: 68 GTNKRRIIQQAVFTELCNMLDPGKP-------SFTPKKGKPCVVMFVGLQGSGKTTTCTK 120
T +Q A+ L +L P + ++GKP V++FVG+ G GK+T K
Sbjct: 378 FTRISSTVQTAMEEALLRILTPRRSIDILRDVHAAKERGKPYVIVFVGVNGVGKSTNLAK 437
Query: 121 YAYYHQRKGFKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFK 180
AY+ + +L DTFR+GA +QL+ +A + +IP + E DP +A E ++
Sbjct: 438 VAYWLLQHNLSVSLAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEAT 497
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGXXXXXXXXXXXXSV 240
+ D+++VDT+GR + L + ++ PDLV+FV ++ +G +
Sbjct: 498 RNKSDVVLVDTAGRMQDNEPLMRALSKLINLNSPDLVLFVGEALVGNDAVDQLTKFNQKL 557
Query: 241 S----------VGAVIVTKMDG-HAKGGGALSAVAATKSPVIFIGTGEHIDEFEVFDVKP 289
+ + +++TK D K G ALS V + +PV+F+G G+ + + +VK
Sbjct: 558 ADLSAVPTTRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKS 617
Query: 290 FVSRLL 295
V LL
Sbjct: 618 IVKTLL 623
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,708,609
Number of extensions: 578334
Number of successful extensions: 1433
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1428
Number of HSP's successfully gapped: 5
Length of query: 496
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 391
Effective length of database: 11,553,331
Effective search space: 4517352421
Effective search space used: 4517352421
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)