Os11g0153700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Signal recognition particle 54 kDa protein, chloroplast precursor (SRP54) (54 chloroplast protein) (54CP) (FFC).
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Os11g0153700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Signal recognition particle 54 kDa protein, chloroplast precursor (SRP54) (54 chloroplast protein) (54CP) (FFC).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.45 | 0.31 | 12.7 | -1.26 | 0.466 | 0.889 | 0.0403 | -0.161 | -0.606 | 23.4 | 24.2 | 99 | -- | -- |
| 43.47 | 0.307 | 12.7 | -1.24 | 0.462 | 0.871 | 0.0489 | -- | -0.604 | 23.4 | 24.12 | 99 | -- | -- |
| 43.46 | 0.307 | 12.7 | -1.26 | 0.466 | 0.89 | -- | -0.188 | -0.608 | 23.4 | 24.18 | 99 | -- | -- |
| 43.47 | 0.307 | 12.7 | -1.24 | 0.465 | 0.872 | -- | -- | -0.602 | 23.3 | 24.11 | 99 | -- | -- |
| 50.17 | 0.33 | 12.7 | -1.24 | -- | 0.789 | -- | 0.0422 | -0.6 | -- | 23.83 | 573 | -- | -- |
| 55.89 | 0.35 | 12.7 | -1.08 | 0.462 | -- | 0.193 | -- | -0.499 | 20.1 | -- | -- | -- | -- |
| 56.01 | 0.35 | 12.7 | -1.08 | 0.461 | -- | -- | -- | -0.499 | 20.2 | -- | -- | -- | -- |
| 50.14 | 0.33 | 12.7 | -1.24 | -- | 0.785 | -- | -- | -0.596 | -- | 23.51 | 577 | -- | -- |
| 81.15 | 0.422 | 12.6 | -- | 0.472 | 0.604 | -- | -- | -0.401 | 21.8 | 25.65 | 95 | -- | -- |
| 67.71 | 0.384 | 12.7 | -1.09 | -- | -- | -- | -- | -0.504 | -- | -- | -- | -- | -- |
| 86.84 | 0.436 | 12.6 | -- | 0.467 | -- | -- | -- | -0.378 | 20 | -- | -- | -- | -- |
| 88.75 | 0.439 | 12.6 | -- | -- | 0.582 | -- | -- | -0.416 | -- | 24.9 | 465 | -- | -- |
| 98.78 | 0.464 | 12.6 | -- | -- | -- | -- | -- | -0.384 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.90 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 18 | 43.20 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 24 | 43.22 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 28 | 43.25 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 29 | 43.25 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 48 | 43.42 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 53 | 43.49 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 57 | 43.52 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 65 | 43.57 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 70 | 43.59 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 72 | 43.60 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 86 | 43.66 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 90 | 43.69 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 95 | 43.71 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 100 | 43.73 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 101 | 43.73 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 127 | 43.79 | temperature | 25 | 90 | > th | dose dependent | sin | 0 | NA |
| 244 | 44.07 | temperature | 25 | 10 | > th | dose dependent | sin | 22 | NA |
| 248 | 44.08 | temperature | 25 | 270 | > th | dose dependent | sin | 3 | NA |
| 361 | 44.70 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 13 |
| 370 | 44.75 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 385 | 44.81 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 416 | 44.94 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 591 | 45.32 | temperature | 30 | 10 | < th | dose dependent | sin | 22 | NA |
| 608 | 45.35 | humidity | 80 | 1440 | > th | dose independent | sin | 23 | NA |
| 661 | 45.48 | humidity | 80 | 1440 | < th | dose independent | sin | 23 | NA |
| 677 | 45.50 | temperature | 25 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 700 | 45.54 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 731 | 45.61 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 759 | 45.65 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 769 | 45.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 805 | 45.72 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 931 | 45.93 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 983 | 46.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 16 |