Os08g0480100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Longin-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0480100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Longin-like domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.33 | 0.236 | 13.7 | -0.114 | 0.639 | -0.328 | -0.271 | -0.415 | 0.116 | 4.75 | 25.8 | 83 | -- | -- |
| 25.76 | 0.236 | 13.7 | -0.013 | 0.635 | -0.342 | -0.101 | -- | 0.152 | 4.68 | 25.79 | 78 | -- | -- |
| 25.46 | 0.235 | 13.7 | -0.0911 | 0.637 | -0.329 | -- | -0.32 | 0.127 | 4.74 | 25.8 | 79 | -- | -- |
| 25.77 | 0.236 | 13.7 | -0.00729 | 0.635 | -0.344 | -- | -- | 0.154 | 4.72 | 25.79 | 78 | -- | -- |
| 39.62 | 0.293 | 13.7 | -0.0061 | -- | -0.539 | -- | -0.203 | 0.213 | -- | 26.38 | 146 | -- | -- |
| 32.03 | 0.265 | 13.8 | -0.112 | 0.897 | -- | 0.0875 | -- | 0.0174 | 4.38 | -- | -- | -- | -- |
| 32.05 | 0.265 | 13.8 | -0.113 | 0.898 | -- | -- | -- | 0.0169 | 4.38 | -- | -- | -- | -- |
| 38.12 | 0.288 | 13.7 | 0.0889 | -- | -0.689 | -- | -- | 0.195 | -- | 26.6 | 239 | -- | -- |
| 25.77 | 0.236 | 13.7 | -- | 0.634 | -0.345 | -- | -- | 0.155 | 4.72 | 25.78 | 78 | -- | -- |
| 75.32 | 0.406 | 13.8 | -0.0772 | -- | -- | -- | -- | 0.0407 | -- | -- | -- | -- | -- |
| 32.39 | 0.266 | 13.8 | -- | 0.896 | -- | -- | -- | 0.0295 | 4.39 | -- | -- | -- | -- |
| 38.34 | 0.288 | 13.7 | -- | -- | -0.696 | -- | -- | 0.195 | -- | 26.54 | 239 | -- | -- |
| 75.47 | 0.406 | 13.8 | -- | -- | -- | -- | -- | 0.0492 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.76 | temperature | 25 | 90 | < th | dose independent | rect. | 11 | 11 |
| 3 | 24.90 | temperature | 25 | 90 | > th | dose independent | sin | 21 | NA |
| 4 | 25.05 | temperature | 25 | 10 | < th | dose independent | sin | 20 | NA |
| 5 | 25.06 | temperature | 30 | 30 | < th | dose dependent | sin | 21 | NA |
| 6 | 25.08 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 16 | 25.18 | temperature | 30 | 30 | < th | dose dependent | rect. | 10 | 13 |
| 28 | 25.30 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 17 |
| 30 | 25.32 | temperature | 25 | 10 | < th | dose independent | rect. | 10 | 12 |
| 40 | 25.37 | temperature | 20 | 30 | > th | dose dependent | sin | 21 | NA |
| 46 | 25.42 | temperature | 10 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 51 | 25.46 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 54 | 25.47 | temperature | 20 | 30 | > th | dose dependent | rect. | 8 | 19 |
| 65 | 25.52 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 13 |
| 66 | 25.52 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 20 |
| 78 | 25.59 | temperature | 25 | 90 | < th | dose independent | rect. | 7 | 15 |
| 87 | 25.62 | temperature | 25 | 10 | < th | dose independent | rect. | 8 | 14 |
| 96 | 25.64 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 98 | 25.64 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 105 | 25.67 | temperature | 25 | 90 | > th | dose independent | rect. | 23 | 22 |
| 131 | 25.72 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 133 | 25.72 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 134 | 25.73 | temperature | 25 | 10 | > th | dose independent | rect. | 8 | 12 |
| 144 | 25.76 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 22 |
| 154 | 25.78 | temperature | 25 | 10 | < th | dose independent | rect. | 6 | 16 |
| 163 | 25.80 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 170 | 25.83 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 14 |
| 208 | 25.90 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 23 |
| 227 | 25.93 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 17 |
| 243 | 25.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 17 |
| 299 | 26.07 | temperature | 20 | 30 | > th | dose dependent | no | NA | NA |
| 346 | 26.15 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 361 | 26.19 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 1 |
| 370 | 26.20 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 23 |
| 379 | 26.21 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 21 |
| 382 | 26.22 | temperature | 25 | 90 | < th | dose independent | rect. | 13 | 9 |
| 424 | 26.28 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 19 |
| 430 | 26.29 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 19 |
| 447 | 26.31 | temperature | 25 | 90 | > th | dose independent | rect. | 13 | 23 |
| 466 | 26.33 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 487 | 26.36 | temperature | 25 | 90 | > th | dose independent | rect. | 4 | 23 |
| 505 | 26.38 | temperature | 25 | 90 | > th | dose independent | no | NA | NA |
| 541 | 26.41 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 15 |
| 594 | 26.45 | temperature | 25 | 90 | > th | dose independent | rect. | 2 | 23 |
| 658 | 26.50 | temperature | 25 | 90 | < th | dose independent | rect. | 15 | 6 |
| 662 | 26.50 | radiation | 1 | 270 | < th | dose dependent | rect. | 17 | 1 |
| 699 | 26.52 | temperature | 25 | 90 | < th | dose independent | rect. | 10 | 23 |
| 716 | 26.53 | temperature | 25 | 90 | > th | dose independent | rect. | 11 | 23 |
| 780 | 26.56 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 817 | 26.58 | temperature | 25 | 90 | < th | dose independent | no | NA | NA |
| 859 | 26.61 | temperature | 25 | 10 | > th | dose independent | rect. | 8 | 17 |
| 892 | 26.62 | temperature | 25 | 90 | < th | dose independent | rect. | 13 | 23 |
| 931 | 26.64 | temperature | 25 | 10 | > th | dose independent | rect. | 8 | 20 |
| 976 | 26.67 | temperature | 25 | 90 | > th | dose independent | rect. | 19 | 23 |