BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0460600 Os08g0460600|AK103510
(127 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0460600 Conserved hypothetical protein 244 1e-65
Os01g0940000 FAD linked oxidase, N-terminal domain containi... 101 1e-22
Os01g0775400 Similar to Cytokinin dehydrogenase 5 precursor... 94 3e-20
Os01g0187600 Similar to Cytokinin dehydrogenase 1 precursor... 93 5e-20
Os05g0374200 Similar to Cytokinin dehydrogenase 1 precursor... 90 5e-19
Os02g0220100 82 1e-16
Os04g0523500 74 2e-14
Os10g0483500 FAD linked oxidase, N-terminal domain containi... 72 1e-13
>Os08g0460600 Conserved hypothetical protein
Length = 127
Score = 244 bits (624), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 118/127 (92%), Positives = 118/127 (92%)
Query: 1 LKRPLINTFACDRWDPATSVALPNGEIFYLVALLRFCRPYPGGGPPVDELVAQNNAIIDA 60
LKRPLINTFACDRWDPATSVALPNGEIFYLVALLRFCRPYPGGGPPVDELVAQNNAIIDA
Sbjct: 1 LKRPLINTFACDRWDPATSVALPNGEIFYLVALLRFCRPYPGGGPPVDELVAQNNAIIDA 60
Query: 61 CRSNGYDYKIYFPSYHAQSDWSRHFGAKWSRFVDRKARYDPLAILAPGQNIFARTPXXXX 120
CRSNGYDYKIYFPSYHAQSDWSRHFGAKWSRFVDRKARYDPLAILAPGQNIFARTP
Sbjct: 61 CRSNGYDYKIYFPSYHAQSDWSRHFGAKWSRFVDRKARYDPLAILAPGQNIFARTPSSVA 120
Query: 121 XXXXXIV 127
IV
Sbjct: 121 AAAAVIV 127
>Os01g0940000 FAD linked oxidase, N-terminal domain containing protein
Length = 529
Score = 101 bits (252), Expect = 1e-22, Method: Composition-based stats.
Identities = 49/102 (48%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 13 RWDPATSVALPNGEIFYLVALLRFCRPYPGGGPPVDELVAQNNAIIDACRSNGYDYKIYF 72
+WD TSV +P+ EIFYLV L P G V+ + NN I+D C NG K Y
Sbjct: 422 KWDNRTSVVIPDEEIFYLVGFLS-SAPSSSGHGSVEHAMNLNNKIVDFCEKNGVGMKQYL 480
Query: 73 PSYHAQSDWSRHFGAKWSRFVDRKARYDPLAILAPGQNIFAR 114
Y Q W HFGA+W F RK YDPLAILAPGQ IF +
Sbjct: 481 APYTTQKQWKAHFGARWETFERRKHTYDPLAILAPGQRIFPK 522
>Os01g0775400 Similar to Cytokinin dehydrogenase 5 precursor (EC 1.5.99.12)
(Cytokinin oxidase 5) (CKO5) (AtCKX5) (AtCKX6)
Length = 534
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 13 RWDPATSVALPNGEIFYLVALLRFCRPYPGGGPPVDELVA---QNNAIIDACRSNGYDYK 69
+WDP +SV P ++FYLVA LR PG P L A QN I++ C G K
Sbjct: 425 KWDPRSSVVTPEEDVFYLVAFLR--SAVPGSTDPAQSLEALERQNREILEFCDEAGIGAK 482
Query: 70 IYFPSYHAQSDWSRHFGAKWSRFVDRKARYDPLAILAPGQNIFARTP 116
Y P++ AQ +W HFGA+W+RF KA +DP A+LA GQ IF P
Sbjct: 483 QYLPNHKAQREWEAHFGARWARFARLKAEFDPRAMLATGQGIFDSPP 529
>Os01g0187600 Similar to Cytokinin dehydrogenase 1 precursor (EC 1.5.99.12)
(Cytokinin oxidase 1) (CKO 1) (COX 1) (ZmCKX1)
Length = 123
Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 59/102 (57%), Gaps = 7/102 (6%)
Query: 13 RWDPATSVALPNGE--IFYLVALLRFCRPYPGGGPPVDELVAQNNAIIDACRSNGYDYKI 70
RWD A S P GE +FY+V+LL + V L AQN I+ C G YK
Sbjct: 26 RWDAAMSAVTPEGEEEVFYVVSLL-----FSAVANDVAALEAQNRRILRFCDLAGIGYKA 80
Query: 71 YFPSYHAQSDWSRHFGAKWSRFVDRKARYDPLAILAPGQNIF 112
Y Y ++ DW RHFGAKW RFV RK +YDP +L+PGQ+IF
Sbjct: 81 YLAHYDSRGDWVRHFGAKWDRFVQRKDKYDPKKLLSPGQDIF 122
>Os05g0374200 Similar to Cytokinin dehydrogenase 1 precursor (EC 1.5.99.12)
(Cytokinin oxidase 1) (CKO 1) (AtCKX1)
Length = 521
Score = 89.7 bits (221), Expect = 5e-19, Method: Composition-based stats.
Identities = 46/103 (44%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 13 RWDPATSVALPNGEIFYLVALLRFCRPYPGGGP-PVDELVAQNNAIIDACRSNGYDYKIY 71
RWD TSV +P+ E+FYLVA L GP + + N II+ G K Y
Sbjct: 415 RWDNRTSVVIPDEEVFYLVAFLS-----SALGPHNIKHTLDLNYRIIEFSDKAGIGVKQY 469
Query: 72 FPSYHAQSDWSRHFGAKWSRFVDRKARYDPLAILAPGQNIFAR 114
P+Y + +W HFGA+W F RK YDPLAILAPGQ IF +
Sbjct: 470 LPNYTTEQEWQSHFGARWDTFQQRKKAYDPLAILAPGQRIFQK 512
>Os02g0220100
Length = 524
Score = 82.0 bits (201), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/100 (41%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 14 WDPATSVALPNGEIFYLVALLRFCRPYPGGGPPVDELVAQNNAIIDACRSNGYDYKIYFP 73
WD + ++FY V LLR V+ L +N A++ C + K Y P
Sbjct: 419 WDDCMMAVASDDDVFYAVGLLRSAAVIGD----VERLEKENEAVLAFCHNEDIGCKQYLP 474
Query: 74 SYHAQSDWSRHFGAKWSRFVDRKARYDPLAILAPGQNIFA 113
Y +Q W RHFGAKWSR D KA+YDP IL+PGQ IF+
Sbjct: 475 YYTSQDGWQRHFGAKWSRVADLKAKYDPHRILSPGQRIFS 514
>Os04g0523500
Length = 532
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Query: 5 LINTFACDRWDPATSVALPNG--EIFYLVALLRFCRPYPGGGPPVDELVAQNNAIID-AC 61
L+ D+WD TS +P + Y+ +LR P G VD ++A++ + D AC
Sbjct: 408 LVYPLLTDKWDGNTSAVVPAAPDGVMYIFGVLRSTDPARCGRACVDSIMARHRRVADEAC 467
Query: 62 RSNGYDY-----KIYFPSYHAQSDWSRHFGAKWSRFVDRKARYDPLAILAPGQNIFART 115
R G K Y + + W HFGA W RF RKAR+DPL +L PGQ IF RT
Sbjct: 468 RDGGGGGRGIGAKQYLARQPSPARWRDHFGAGWGRFAARKARFDPLHVLGPGQGIFPRT 526
>Os10g0483500 FAD linked oxidase, N-terminal domain containing protein
Length = 527
Score = 71.6 bits (174), Expect = 1e-13, Method: Composition-based stats.
Identities = 39/106 (36%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 13 RWDPATSVALPNG----EIFYLVALLRFCRPYPGGGPPVDELVAQNNAIIDACRSNGYDY 68
+WD TSV LP+ ++ Y V +LR P G + + + + ++G
Sbjct: 409 KWDTNTSVVLPDSGSTDQVMYAVGILRSANPDDGCSHHCLQELLLRHRRLAGAAASGLGA 468
Query: 69 KIYFPSYHAQSDWSRHFGAKWSRFVDRKARYDPLAILAPGQNIFAR 114
K Y + + W RHFG +W RF DRKAR+DP IL PGQ IF R
Sbjct: 469 KQYLAHHPTPAGWRRHFGRRWERFADRKARFDPRCILGPGQGIFPR 514
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.142 0.476
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,076,242
Number of extensions: 216101
Number of successful extensions: 566
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 560
Number of HSP's successfully gapped: 8
Length of query: 127
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 38
Effective length of database: 12,388,755
Effective search space: 470772690
Effective search space used: 470772690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 150 (62.4 bits)