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Os01g0940000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : FAD linked oxidase, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.1 (0.0347) R2 : 0.818
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.28 (0.0901) R2dC : 0.563 R2C : 0.672
β3 : -1.26 (0.0702) R2dE : 0.14 R2E : 0.248
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.432 (0.0734) R2dN8 : 0.0172 R2N8 : -0.00437
σ : 0.649
deviance : 194.39
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C
peak time of C : 8.18
E
wheather : radiation
threshold : 2.752
memory length : 72
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 23
open length of G : 20.9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
187.72 0.644 11.1 -0.393 3.2 -1.28 0.212 0.956 -0.462 8.13 2.514 75 22.9 21.2
190.97 0.644 11.1 -0.373 3.26 -1.28 -0.307 -- -0.459 8.13 2.75 75 22.9 21
187.21 0.637 11.1 -0.367 3.23 -1.3 -- 0.906 -0.449 8.13 2.512 76 22.9 21
190.78 0.643 11.1 -0.371 3.26 -1.28 -- -- -0.466 8.14 2.75 72 23 20.9
480.5 1.02 11.2 -0.372 -- -2.28 -- 1.08 -0.405 -- 2.98 6 23.2 24
255.63 0.75 11.1 -0.376 3.7 -- -0.648 -- -0.272 9.33 -- -- -- --
257.14 0.751 11.1 -0.399 3.7 -- -- -- -0.273 9.33 -- -- -- --
458.58 0.997 11.2 -0.249 -- -2.3 -- -- -0.257 -- 4.6 3 23.9 24
194.39 0.649 11.1 -- 3.28 -1.26 -- -- -0.432 8.18 2.752 72 23 20.9
1057.29 1.52 11.2 -0.418 -- -- -- -- -0.258 -- -- -- -- --
261.35 0.756 11.1 -- 3.7 -- -- -- -0.229 9.34 -- -- -- --
459.96 0.999 11.2 -- -- -2.34 -- -- -0.308 -- 4.64 3 17.2 24
1061.89 1.52 11.2 -- -- -- -- -- -0.212 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 195.65 radiation 10.0 30 < th dose dependent rect. 23 21
2 197.04 radiation 1.0 90 < th dose independent rect. 23 21
14 203.56 radiation 10.0 10 < th dose dependent rect. 7 23
22 206.70 radiation 10.0 10 < th dose dependent rect. 10 20
25 207.01 radiation 1.0 30 < th dose independent rect. 1 19
40 208.28 radiation 10.0 30 < th dose dependent rect. 10 23
47 208.46 radiation 1.0 30 > th dose independent sin 1 NA
48 208.51 radiation 10.0 30 < th dose dependent rect. 1 19
49 208.74 radiation 1.0 30 > th dose independent rect. 17 23
73 210.37 radiation 10.0 30 < th dose dependent rect. 13 23
74 210.38 radiation 10.0 30 < th dose dependent no NA NA
78 210.45 radiation 10.0 30 < th dose dependent rect. 15 23
102 211.71 radiation 1.0 10 < th dose independent sin 1 NA
121 212.56 radiation 1.0 30 > th dose independent rect. 5 11
143 213.04 temperature 30.0 90 < th dose independent rect. 15 14
169 213.82 humidity 60.0 90 > th dose independent rect. 15 14
219 215.13 radiation 10.0 30 < th dose dependent rect. 17 23
223 215.17 radiation 40.0 10 < th dose dependent rect. 10 10
241 215.89 radiation 1.0 30 > th dose independent rect. 11 23
242 215.95 radiation 40.0 90 < th dose dependent rect. 15 14
247 216.08 atmosphere 1000.0 90 > th dose independent rect. 15 14
253 216.14 radiation 1.0 10 < th dose dependent sin 1 NA
286 217.28 humidity 90.0 30 < th dose independent rect. 20 20
315 218.19 precipitation 0.1 270 < th dose independent rect. 3 11
316 218.19 precipitation 0.1 270 < th dose dependent rect. 3 11
321 218.33 radiation 40.0 270 < th dose independent rect. 13 14
335 218.77 humidity 90.0 30 < th dose independent rect. 20 13
341 218.97 radiation 10.0 90 < th dose dependent rect. 7 12
361 219.50 radiation 40.0 720 < th dose dependent rect. 15 4
376 219.88 temperature 30.0 30 < th dose independent rect. 15 5
386 220.09 humidity 50.0 90 > th dose dependent rect. 15 14
393 220.23 temperature 30.0 90 < th dose independent rect. 23 21
394 220.24 radiation 10.0 10 < th dose dependent rect. 7 13
414 220.85 radiation 30.0 720 < th dose independent rect. 15 4
417 220.91 temperature 20.0 90 > th dose independent rect. 1 4
418 220.93 atmosphere 1000.0 90 > th dose independent rect. 23 21
423 221.00 radiation 10.0 90 < th dose dependent rect. 11 8
432 221.05 precipitation 0.1 90 < th dose independent rect. 5 10
433 221.05 precipitation 0.1 90 < th dose dependent rect. 5 10
441 221.16 radiation 1.0 30 < th dose independent rect. 15 21
446 221.17 humidity 50.0 10 > th dose dependent rect. 13 7
449 221.24 temperature 30.0 90 < th dose independent rect. 13 7
451 221.31 humidity 50.0 10 > th dose dependent rect. 23 21
454 221.36 radiation 10.0 10 < th dose independent rect. 10 20
461 221.47 precipitation 0.1 270 < th dose independent rect. 14 13
462 221.47 wind 9.0 90 < th dose independent rect. 15 14
464 221.47 precipitation 0.1 270 < th dose dependent rect. 14 13
469 221.52 temperature 10.0 90 > th dose independent rect. 5 10
470 221.52 atmosphere 1015.0 90 < th dose independent rect. 5 10
471 221.52 temperature 10.0 90 > th dose independent rect. 15 14
481 221.58 humidity 50.0 90 > th dose independent rect. 5 10
484 221.59 radiation 1.0 30 < th dose independent rect. 15 17
516 221.83 radiation 10.0 10 < th dose independent rect. 7 23
518 221.84 temperature 10.0 270 > th dose independent rect. 3 11
519 221.84 atmosphere 995.0 270 > th dose independent rect. 3 11
520 221.84 atmosphere 1015.0 270 < th dose independent rect. 3 11
528 221.93 atmosphere 1000.0 10 > th dose independent rect. 15 14
534 221.98 humidity 70.0 10 > th dose independent rect. 13 7
538 222.03 humidity 90.0 30 < th dose dependent rect. 20 11
541 222.04 radiation 1.0 30 > th dose independent no NA NA
542 222.04 atmosphere 995.0 90 > th dose independent rect. 5 10
599 222.06 radiation 1.0 30 < th dose independent no NA NA
630 222.14 temperature 30.0 90 < th dose independent rect. 1 19
640 222.25 radiation 10.0 30 < th dose dependent rect. 1 23
657 222.40 temperature 30.0 270 < th dose independent rect. 15 2
658 222.40 radiation 1.0 30 < th dose independent rect. 17 23
668 222.45 humidity 50.0 90 > th dose dependent rect. 23 21
696 222.71 atmosphere 1005.0 90 > th dose independent rect. 15 4
745 223.05 humidity 50.0 10 > th dose dependent rect. 15 15
747 223.07 temperature 20.0 270 > th dose independent rect. 1 1
757 223.17 wind 1.0 270 > th dose independent rect. 18 13
764 223.29 wind 9.0 90 < th dose independent rect. 5 10
846 223.42 radiation 10.0 10 < th dose independent rect. 10 10
855 223.51 wind 1.0 90 > th dose independent rect. 5 10
860 223.55 wind 9.0 270 < th dose independent rect. 3 11
867 223.57 precipitation 0.1 720 < th dose independent rect. 19 12
877 223.57 precipitation 0.1 720 < th dose dependent rect. 19 12
882 223.63 radiation 1.0 90 < th dose independent rect. 1 11
883 223.64 humidity 60.0 90 > th dose independent rect. 15 5
893 223.73 temperature 20.0 270 > th dose independent rect. 23 4
948 224.10 wind 9.0 90 < th dose independent rect. 23 21
953 224.13 atmosphere 1000.0 10 > th dose dependent rect. 15 5
960 224.14 atmosphere 1000.0 30 > th dose independent rect. 1 19
974 224.16 humidity 50.0 270 > th dose independent rect. 3 11
978 224.18 wind 9.0 720 < th dose independent rect. 19 12