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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0775400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cytokinin dehydrogenase 5 precursor (EC 1.5.99.12) (Cytokinin oxidase 5) (CKO5) (AtCKX5) (AtCKX6).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.79 (0.0963) R2 : 0.393
β1 : 1.04 (0.341) R2dD : 0.0351 R2D : -0.174
β2 : 0.929 (0.141) R2dC : 0.0577 R2C : 0.042
β3 : -5.12 (0.533) R2dE : 0.839 R2E : -0.4
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -12.5 (1.87) R2dD*E : 0.378 R2D*E : -0.296
γ1 : 1.47 (0.15) R2dN8 : 0.265 R2N8 : 0.00718
σ : 1.06
deviance : 514.51
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C
peak time of C : 15.3
E
wheather : radiation
threshold : 2.801
memory length : 4319
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2
open length of G : 2.98

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
509.37 1.06 4.73 0.925 0.94 -5.16 -1.4 -12.4 1.49 15.7 2.334 4320 2.01 3
553.45 1.1 4.31 0.939 0.88 -4.83 -1.35 -- 1.62 15.3 1.749 4317 2.16 2.98
514.51 1.06 4.79 1.04 0.929 -5.12 -- -12.5 1.47 15.3 2.801 4319 2 2.98
544.19 1.09 4.27 0.859 0.856 -4.39 -- -- 1.67 15.3 1.92 4320 2.17 3
555.25 1.1 4.75 0.828 -- -5.02 -- -12 1.44 -- 2.895 4320 2.02 3.01
616.97 1.16 4.42 -1.53 0.9 -- -1.4 -- 1.05 15.7 -- -- -- --
622.21 1.17 4.42 -1.55 0.889 -- -- -- 1.04 15.3 -- -- -- --
567.44 1.11 4.33 0.212 -- -3.97 -- -- 1.67 -- 1.606 4323 2.16 3
528.15 1.07 4.34 -- 0.71 -3.61 -- -- 1.52 15.5 1.429 4323 2.15 3.01
666.88 1.21 4.43 -1.58 -- -- -- -- 1.02 -- -- -- -- --
685.27 1.22 4.39 -- 0.919 -- -- -- 1.21 15.3 -- -- -- --
561.31 1.1 4.31 -- -- -3.65 -- -- 1.54 -- 1.425 4326 2.16 2.99
733.1 1.26 4.39 -- -- -- -- -- 1.19 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 508.85 humidity 90 14400 > th dose dependent rect. 2 6
8 511.64 humidity 90 14400 > th dose dependent rect. 5 1
22 514.88 humidity 90 14400 > th dose independent rect. 2 6
23 515.13 radiation 1 4320 < th dose dependent rect. 2 3
25 515.18 radiation 1 4320 < th dose dependent rect. 4 1
51 518.88 humidity 90 14400 > th dose dependent sin 7 NA
65 520.27 humidity 90 14400 > th dose independent rect. 3 4
75 520.88 radiation 1 4320 > th dose independent rect. 18 16
77 521.08 radiation 1 4320 > th dose independent rect. 18 12
88 522.26 humidity 90 14400 > th dose dependent rect. 23 4
101 523.41 radiation 1 4320 < th dose independent rect. 18 16
127 524.88 radiation 1 4320 < th dose independent rect. 18 12
128 524.90 radiation 1 4320 < th dose dependent rect. 19 10
136 525.27 radiation 1 4320 < th dose dependent rect. 21 8
147 526.16 humidity 90 14400 > th dose independent rect. 5 1
192 528.56 humidity 70 43200 > th dose independent rect. 23 13
205 529.05 radiation 1 43200 < th dose dependent rect. 3 2
210 529.30 radiation 1 14400 > th dose independent rect. 18 1
241 529.58 radiation 1 43200 < th dose dependent rect. 19 10
243 529.69 radiation 1 4320 < th dose independent rect. 5 5
244 529.73 radiation 1 43200 < th dose dependent rect. 21 8
255 530.03 radiation 1 4320 > th dose independent rect. 5 5
258 530.07 humidity 70 43200 > th dose independent sin 7 NA
264 530.18 radiation 1 4320 < th dose dependent rect. 23 11
267 530.22 radiation 1 4320 < th dose dependent rect. 19 15
268 530.23 radiation 1 4320 < th dose dependent rect. 3 7
301 530.78 humidity 90 14400 > th dose independent sin 9 NA
308 530.98 humidity 70 43200 > th dose independent rect. 10 1
318 531.37 humidity 70 43200 < th dose independent rect. 22 15
338 531.78 radiation 1 4320 > th dose independent sin 10 NA
354 532.03 humidity 80 43200 < th dose independent rect. 3 7
357 532.05 radiation 1 4320 < th dose independent rect. 3 7
364 532.17 radiation 1 4320 < th dose independent rect. 23 11
365 532.18 radiation 1 4320 < th dose independent rect. 1 9
378 532.33 humidity 90 43200 < th dose dependent rect. 8 1
379 532.36 humidity 70 43200 < th dose independent sin 6 NA
388 532.48 humidity 90 14400 > th dose independent rect. 23 1
429 532.85 radiation 1 4320 < th dose independent sin 10 NA
430 532.86 radiation 1 43200 < th dose independent rect. 18 11
432 532.87 radiation 10 43200 > th dose independent rect. 8 1
457 533.20 humidity 80 43200 < th dose dependent rect. 22 16
464 533.32 radiation 10 43200 > th dose independent rect. 8 3
469 533.37 radiation 1 4320 < th dose dependent sin 9 NA
480 533.76 wind 1 14400 < th dose independent rect. 24 1
481 533.82 wind 1 43200 > th dose independent rect. 2 1
491 533.90 humidity 80 43200 < th dose dependent sin 6 NA
497 533.98 humidity 90 43200 < th dose dependent rect. 2 10
512 534.13 wind 7 43200 < th dose dependent rect. 15 1
617 535.04 humidity 90 14400 < th dose independent rect. 23 9
637 535.20 humidity 70 43200 < th dose independent rect. 10 1
827 536.74 radiation 1 43200 < th dose independent rect. 18 8
831 536.76 radiation 1 43200 < th dose independent rect. 18 4
833 536.77 radiation 1 43200 < th dose independent rect. 18 2
873 536.96 wind 1 14400 > th dose independent rect. 24 1
893 537.04 radiation 20 14400 > th dose independent rect. 6 1
923 537.19 wind 1 43200 > th dose dependent rect. 15 1
991 537.59 wind 1 43200 < th dose independent rect. 2 1