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Os08g0460600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0412) R2 : 0.742
β1 : 1.29 (0.15) R2dD : 0.046 R2D : -0.0172
β2 : 4.92 (0.156) R2dC : 1.39 R2C : 0.411
β3 : -3.28 (0.225) R2dE : 0.295 R2E : -0.734
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.543 (0.0877) R2dN8 : 0.0327 R2N8 : -0.0103
σ : 0.759
deviance : 265.88
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_____
C
peak time of C : 9.27
E
wheather : temperature
threshold : -10.96
memory length : 339
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 21.3
open length of G : 19.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
254.62 0.75 11.2 1.14 4.3 -2.89 -0.824 -3.21 0.544 9.37 8.66 264 22 19
255.47 0.744 11.2 1.47 4.59 -3.33 -1.82 -- 0.637 9.44 1.064 277 22 19.1
254.94 0.744 11.3 1.06 4.26 -2.77 -- -3.39 0.548 9.29 5.97 265 21.9 19.1
265.88 0.759 11.2 1.29 4.92 -3.28 -- -- 0.543 9.27 -10.96 339 21.3 19.2
553.89 1.1 11.1 2.17 -- -4.97 -- -0.292 0.815 -- -13.44 1041 1.77 17.4
366.12 0.897 11.3 1.06 3.3 -- -2.1 -- 0.353 8.66 -- -- -- --
380.64 0.914 11.3 0.995 3.31 -- -- -- 0.353 8.65 -- -- -- --
311.21 0.822 11.4 1.39 -- -4.3 -- -- 0.526 -- -12.93 494 7.72 18.8
307.98 0.817 11.3 -- 4.85 -2.88 -- -- 0.401 9.12 -18.07 302 21.7 19
997.77 1.48 11.4 1 -- -- -- -- 0.381 -- -- -- -- --
406.73 0.943 11.3 -- 3.31 -- -- -- 0.242 8.63 -- -- -- --
359.5 0.883 11.4 -- -- -3.98 -- -- 0.341 -- -15.3 495 7.94 18.4
1024.36 1.49 11.4 -- -- -- -- -- 0.27 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 256.49 temperature 10.0 270 > th dose dependent rect. 22 19
2 259.24 temperature 30.0 270 < th dose independent rect. 3 9
4 261.53 radiation 10.0 270 < th dose independent rect. 17 5
5 261.78 wind 9.0 270 < th dose independent rect. 22 19
6 261.82 humidity 50.0 270 > th dose independent rect. 17 5
8 262.39 radiation 20.0 270 < th dose dependent rect. 17 5
12 262.82 atmosphere 995.0 270 > th dose independent rect. 17 5
14 263.12 radiation 1.0 270 < th dose independent rect. 18 3
15 263.20 radiation 1.0 270 < th dose dependent rect. 18 3
16 263.24 wind 9.0 270 < th dose independent rect. 21 21
18 263.52 humidity 60.0 270 > th dose independent rect. 18 3
19 263.74 temperature 10.0 270 > th dose independent rect. 17 5
23 263.74 temperature 10.0 270 > th dose independent rect. 22 19
24 263.83 temperature 15.0 270 > th dose independent rect. 3 9
25 263.87 atmosphere 1015.0 270 < th dose independent rect. 22 19
26 263.93 precipitation 0.1 270 < th dose independent rect. 17 5
27 263.93 precipitation 0.1 270 < th dose dependent rect. 17 5
28 264.05 wind 9.0 270 < th dose independent rect. 17 5
29 264.34 temperature 30.0 270 < th dose independent rect. 18 3
32 264.78 atmosphere 995.0 270 > th dose independent rect. 18 3
35 265.11 temperature 30.0 270 < th dose independent rect. 17 5
40 265.35 wind 9.0 270 < th dose independent rect. 18 3
42 265.40 temperature 10.0 270 > th dose independent rect. 18 3
44 265.40 radiation 20.0 270 < th dose independent rect. 18 3
47 265.40 temperature 10.0 270 > th dose independent rect. 21 21
52 265.99 precipitation 0.1 270 < th dose independent rect. 3 10
53 265.99 precipitation 0.1 270 < th dose dependent rect. 3 10
60 266.65 temperature 30.0 90 < th dose independent rect. 19 18
64 267.12 precipitation 0.1 270 < th dose independent rect. 22 19
65 267.12 precipitation 0.1 270 < th dose dependent rect. 22 19
70 267.53 wind 9.0 270 < th dose independent rect. 13 14
72 267.91 wind 1.0 270 > th dose independent rect. 18 3
81 268.12 precipitation 0.1 270 < th dose independent rect. 18 3
82 268.12 precipitation 0.1 270 < th dose dependent rect. 18 3
83 268.18 temperature 30.0 270 < th dose independent rect. 17 18
97 269.11 wind 1.0 270 > th dose independent rect. 17 5
102 269.39 atmosphere 995.0 270 > th dose independent rect. 3 10
103 269.39 atmosphere 1015.0 270 < th dose independent rect. 3 10
104 269.39 temperature 10.0 270 > th dose independent rect. 13 14
118 270.41 atmosphere 1015.0 270 < th dose independent rect. 18 3
120 270.86 wind 9.0 270 < th dose dependent rect. 17 5
121 270.90 wind 9.0 270 < th dose independent rect. 3 10
122 270.98 wind 9.0 270 < th dose dependent rect. 18 3
173 273.11 precipitation 0.1 270 < th dose independent rect. 21 21
174 273.11 precipitation 0.1 270 < th dose dependent rect. 21 21
175 273.15 atmosphere 1015.0 270 < th dose independent rect. 21 21
185 273.63 precipitation 0.1 270 < th dose independent rect. 13 14
186 273.63 precipitation 0.1 270 < th dose dependent rect. 13 14
196 274.03 atmosphere 1015.0 270 < th dose independent rect. 17 5
210 274.91 atmosphere 995.0 270 > th dose independent rect. 22 19
213 275.27 wind 9.0 270 < th dose independent rect. 19 1
214 275.28 temperature 10.0 270 > th dose independent rect. 19 1
215 275.28 temperature 30.0 270 < th dose independent rect. 19 1
216 275.28 humidity 50.0 270 > th dose independent rect. 19 1
217 275.28 atmosphere 995.0 270 > th dose independent rect. 19 1
218 275.28 atmosphere 1015.0 270 < th dose independent rect. 19 1
219 275.28 radiation 1.0 270 < th dose independent rect. 19 1
225 275.28 temperature 10.0 270 > th dose independent rect. 20 23
226 275.28 radiation 1.0 270 < th dose dependent rect. 19 1
232 275.34 temperature 30.0 90 < th dose independent rect. 18 21
242 275.98 radiation 10.0 270 < th dose dependent rect. 10 12
247 276.41 wind 1.0 270 > th dose independent rect. 19 1
271 276.75 humidity 50.0 270 > th dose dependent rect. 18 3
274 276.81 radiation 10.0 270 < th dose independent rect. 10 12
302 277.48 radiation 10.0 270 < th dose dependent rect. 8 14
306 277.60 radiation 40.0 270 < th dose dependent rect. 17 18
310 277.80 radiation 40.0 270 < th dose independent rect. 17 18
349 279.10 wind 9.0 270 < th dose dependent rect. 19 1
364 279.42 humidity 50.0 270 > th dose independent rect. 3 9
367 279.61 atmosphere 995.0 270 > th dose dependent rect. 18 3
372 279.72 precipitation 0.1 270 < th dose independent rect. 19 1
373 279.72 precipitation 0.1 270 < th dose dependent rect. 19 1
383 280.00 humidity 50.0 270 > th dose dependent rect. 17 5
392 280.32 radiation 40.0 270 < th dose dependent rect. 18 15
408 280.75 radiation 40.0 90 < th dose independent rect. 19 18
414 280.98 temperature 30.0 270 < th dose independent rect. 4 18
430 281.33 humidity 50.0 270 > th dose independent rect. 23 17
437 281.62 radiation 20.0 270 < th dose independent rect. 18 15
442 281.76 radiation 40.0 270 < th dose dependent rect. 4 19
447 281.94 temperature 10.0 270 > th dose dependent rect. 18 3
448 282.01 temperature 10.0 270 > th dose dependent rect. 22 6
495 283.12 wind 9.0 90 < th dose independent rect. 1 17
506 283.35 atmosphere 995.0 270 > th dose dependent rect. 17 5
507 283.36 wind 1.0 270 > th dose independent rect. 23 18
529 283.84 temperature 10.0 90 > th dose independent rect. 1 17
530 283.84 atmosphere 1015.0 90 < th dose independent rect. 1 17
540 284.09 atmosphere 1015.0 10 < th dose independent rect. 24 19
607 284.69 radiation 1.0 270 < th dose dependent rect. 22 15
609 284.72 humidity 50.0 14400 > th dose independent rect. 19 6
614 284.74 radiation 1.0 270 < th dose dependent rect. 22 13
657 285.19 atmosphere 995.0 270 > th dose dependent rect. 19 1
660 285.22 wind 9.0 270 < th dose independent rect. 11 6
707 285.90 temperature 10.0 270 > th dose dependent rect. 19 1
709 285.92 wind 1.0 270 > th dose independent rect. 11 6
711 285.93 humidity 50.0 270 > th dose dependent rect. 19 1
754 286.28 radiation 1.0 270 < th dose independent rect. 22 15
760 286.33 radiation 1.0 270 < th dose independent rect. 22 13
774 286.60 radiation 20.0 270 < th dose independent rect. 4 19
779 286.70 humidity 50.0 270 > th dose independent rect. 17 18
793 286.92 precipitation 0.1 270 < th dose independent rect. 17 18
795 286.92 precipitation 0.1 270 < th dose dependent rect. 17 18
798 286.97 atmosphere 995.0 270 > th dose independent rect. 17 18
802 287.08 precipitation 0.1 10 < th dose independent rect. 19 5
803 287.08 precipitation 0.1 10 < th dose dependent rect. 19 5
806 287.15 wind 9.0 270 < th dose independent rect. 17 18
813 287.31 temperature 10.0 270 > th dose independent rect. 11 6
814 287.31 atmosphere 1015.0 270 < th dose independent rect. 11 6
815 287.31 temperature 10.0 270 > th dose independent rect. 17 18
835 287.55 radiation 10.0 270 < th dose independent sin 18 NA
846 287.75 precipitation 0.1 270 < th dose independent rect. 11 6
847 287.75 temperature 15.0 90 > th dose independent rect. 19 18
848 287.75 precipitation 0.1 270 < th dose dependent rect. 11 6
854 287.82 wind 1.0 270 > th dose independent rect. 12 15
878 287.94 radiation 1.0 270 < th dose dependent rect. 22 8
885 288.08 wind 9.0 270 < th dose independent rect. 9 9
919 288.43 humidity 50.0 10 > th dose dependent rect. 19 5
941 288.69 temperature 15.0 270 > th dose independent rect. 5 17
949 288.84 wind 1.0 270 > th dose independent rect. 9 9
954 288.94 wind 9.0 10 < th dose dependent rect. 19 5
960 289.04 radiation 1.0 270 < th dose independent rect. 22 8
987 289.20 atmosphere 1015.0 270 < th dose independent rect. 12 15