BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0460600 Os08g0460600|AK103510
(127 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G21482.1 | chr5:7226842-7230052 FORWARD LENGTH=525 129 4e-31
AT3G63440.1 | chr3:23424291-23426265 FORWARD LENGTH=534 103 2e-23
AT2G41510.1 | chr2:17314626-17316861 FORWARD LENGTH=576 100 2e-22
AT1G75450.1 | chr1:28315248-28318064 REVERSE LENGTH=541 86 4e-18
AT5G56970.1 | chr5:23044944-23048245 REVERSE LENGTH=524 79 8e-16
AT4G29740.2 | chr4:14566351-14569132 FORWARD LENGTH=525 77 2e-15
AT2G19500.1 | chr2:8444311-8447301 REVERSE LENGTH=502 74 1e-14
>AT5G21482.1 | chr5:7226842-7230052 FORWARD LENGTH=525
Length = 524
Score = 129 bits (324), Expect = 4e-31, Method: Composition-based stats.
Identities = 60/104 (57%), Positives = 74/104 (71%), Gaps = 2/104 (1%)
Query: 13 RWDPATSVALPN-GEIFYLVALLRFCRPYPGGGPPVDELVAQNNAIIDACRSNGYDYKIY 71
RWD TSV +P GEIFY+VALLRF P V+++VAQN I+ C NG DYK+Y
Sbjct: 421 RWDDRTSVVIPEEGEIFYIVALLRFVPPC-AKVSSVEKMVAQNQEIVHWCVKNGIDYKLY 479
Query: 72 FPSYHAQSDWSRHFGAKWSRFVDRKARYDPLAILAPGQNIFART 115
P Y +Q +W RHFG +WSRFVDRKA +DP+AIL+PGQ IF R+
Sbjct: 480 LPHYKSQEEWIRHFGNRWSRFVDRKAMFDPMAILSPGQKIFNRS 523
>AT3G63440.1 | chr3:23424291-23426265 FORWARD LENGTH=534
Length = 533
Score = 103 bits (257), Expect = 2e-23, Method: Composition-based stats.
Identities = 46/102 (45%), Positives = 59/102 (57%)
Query: 13 RWDPATSVALPNGEIFYLVALLRFCRPYPGGGPPVDELVAQNNAIIDACRSNGYDYKIYF 72
+WD TS P E+FYLVA+L P G V+E++ +N I++ G K Y
Sbjct: 427 KWDNQTSAVTPEEEVFYLVAILTSASPGSAGKDGVEEILRRNRRILEFSEEAGIGLKQYL 486
Query: 73 PSYHAQSDWSRHFGAKWSRFVDRKARYDPLAILAPGQNIFAR 114
P Y + +W HFG KW FV RK+RYDPLAILAPG IF +
Sbjct: 487 PHYTTREEWRSHFGDKWGEFVRRKSRYDPLAILAPGHRIFQK 528
>AT2G41510.1 | chr2:17314626-17316861 FORWARD LENGTH=576
Length = 575
Score = 100 bits (249), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/103 (43%), Positives = 59/103 (57%)
Query: 13 RWDPATSVALPNGEIFYLVALLRFCRPYPGGGPPVDELVAQNNAIIDACRSNGYDYKIYF 72
+W TS+ PN +IFYLVA L P G ++ L+ QN +++ C + + K Y
Sbjct: 440 KWKKHTSLITPNEDIFYLVAFLPSAVPNSSGKNDLEYLLKQNQRVMNFCAAANLNVKQYL 499
Query: 73 PSYHAQSDWSRHFGAKWSRFVDRKARYDPLAILAPGQNIFART 115
P Y Q +W HFG +W F RK YDPLAILAPGQ IF +T
Sbjct: 500 PHYETQKEWKSHFGKRWETFAQRKQAYDPLAILAPGQRIFQKT 542
>AT1G75450.1 | chr1:28315248-28318064 REVERSE LENGTH=541
Length = 540
Score = 86.3 bits (212), Expect = 4e-18, Method: Composition-based stats.
Identities = 44/108 (40%), Positives = 56/108 (51%)
Query: 5 LINTFACDRWDPATSVALPNGEIFYLVALLRFCRPYPGGGPPVDELVAQNNAIIDACRSN 64
LI D+WD +S P+ E+FYLVALLR ++ L QN I++ C
Sbjct: 413 LIYPMNKDKWDERSSAVTPDEEVFYLVALLRSALTDGEETQKLEYLKDQNRRILEFCEQA 472
Query: 65 GYDYKIYFPSYHAQSDWSRHFGAKWSRFVDRKARYDPLAILAPGQNIF 112
+ K Y P + Q +W HFG KW RF KA +DP ILA GQ IF
Sbjct: 473 KINVKQYLPHHATQEEWVAHFGDKWDRFRSLKAEFDPRHILATGQRIF 520
>AT5G56970.1 | chr5:23044944-23048245 REVERSE LENGTH=524
Length = 523
Score = 78.6 bits (192), Expect = 8e-16, Method: Composition-based stats.
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 12 DRWDPATSVALPNGEIFYLVALLRFCRPYPGGGPPVDELVAQNNAIIDACRSNGYDYKIY 71
++W+ S A+P ++FY V LR G + +N I+ C Y
Sbjct: 422 NKWNDRMSAAIPEEDVFYAVGFLR-----SAGFDNWEAFDQENMEILKFCEDANMGVIQY 476
Query: 72 FPSYHAQSDWSRHFGAKWSRFVDRKARYDPLAILAPGQNIFAR 114
P + +Q W RHFG +W+ FV+RK +YDP IL+PGQNIF +
Sbjct: 477 LPYHSSQEGWVRHFGPRWNIFVERKYKYDPKMILSPGQNIFQK 519
>AT4G29740.2 | chr4:14566351-14569132 FORWARD LENGTH=525
Length = 524
Score = 77.4 bits (189), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 12 DRWDPATSVALPNGEIFYLVALLRFCRPYPGGGPPVDELVAQNNAIIDACRSNGYDYKIY 71
++W+ S P+ ++FY++ LL+ GG EL N+ +I C ++G K Y
Sbjct: 427 NKWNNRMSTMTPDEDVFYVIGLLQ----SAGGSQNWQELENLNDKVIQFCENSGIKIKEY 482
Query: 72 FPSYHAQSDWSRHFGAKWSRFVDRKARYDPLAILAPGQNIF 112
Y + DW +HFG KW F+ +K +DP +L+PGQ+IF
Sbjct: 483 LMHYTRKEDWVKHFGPKWDDFLRKKIMFDPKRLLSPGQDIF 523
>AT2G19500.1 | chr2:8444311-8447301 REVERSE LENGTH=502
Length = 501
Score = 74.3 bits (181), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 12 DRWDPATSVALP--NGEIFYLVALLRFCRPYPGGGPPVDELVAQNNAIIDACRSNGYDYK 69
++WD S +P + ++ Y++ LL+ P + E+ + N II C+ +G K
Sbjct: 404 NKWDNRMSAMIPEIDEDVIYIIGLLQSATP-----KDLPEVESVNEKIIRFCKDSGIKIK 458
Query: 70 IYFPSYHAQSDWSRHFGAKWSRFVDRKARYDPLAILAPGQNIF 112
Y Y ++ DW HFG+KW F RK +DP +L+PGQ+IF
Sbjct: 459 QYLMHYTSKEDWIEHFGSKWDDFSKRKDLFDPKKLLSPGQDIF 501
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.142 0.476
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,022,044
Number of extensions: 126162
Number of successful extensions: 258
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 7
Length of query: 127
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 40
Effective length of database: 8,721,377
Effective search space: 348855080
Effective search space used: 348855080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)