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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0187600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cytokinin dehydrogenase 1 precursor (EC 1.5.99.12) (Cytokinin oxidase 1) (CKO 1) (COX 1) (ZmCKX1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.64 (0.0569) R2 : 0.364
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.42 (0.146) R2dC : 0.134 R2C : 0.136
β3 : 1.86 (0.165) R2dE : 0.179 R2E : 0.178
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.692 (0.12) R2dN8 : 0.0603 R2N8 : 0.0321
σ : 1.07
deviance : 524.51
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_____
C
peak time of C : 7.89
E
wheather : humidity
threshold : 70.53
memory length : 1186
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 8.37
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
505.06 1.06 5.59 0.696 1.38 1.67 1.17 2.74 -0.561 7.66 71 1232 8.1 --
518.07 1.06 5.63 0.39 1.42 1.87 1.2 -- -0.658 7.74 70 1201 8.42 --
508.82 1.05 5.59 0.716 1.38 1.65 -- 2.81 -0.557 7.61 70.71 1231 7.83 --
521.56 1.06 5.63 0.34 1.41 1.84 -- -- -0.652 7.82 70.89 1195 8.29 --
603.19 1.14 5.63 0.745 -- 1.9 -- 2.79 -0.55 -- 71.23 1231 7.08 --
641.23 1.19 5.6 0.494 1.64 -- 1.55 -- -0.557 6.63 -- -- -- --
647.27 1.19 5.61 0.519 1.64 -- -- -- -0.561 6.68 -- -- -- --
617.14 1.16 5.66 0.366 -- 2.04 -- -- -0.611 -- 71.35 1213 7.03 --
524.51 1.07 5.64 -- 1.42 1.86 -- -- -0.692 7.89 70.53 1186 8.37 --
787.86 1.31 5.64 0.557 -- -- -- -- -0.528 -- -- -- -- --
654.36 1.2 5.62 -- 1.65 -- -- -- -0.619 6.66 -- -- -- --
620.63 1.16 5.67 -- -- 2.06 -- -- -0.647 -- 71.41 1212 6.95 --
796.05 1.32 5.65 -- -- -- -- -- -0.59 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 510.63 temperature 30 14400 < th dose independent rect. 18 11
4 511.07 temperature 30 14400 < th dose independent rect. 18 1
6 511.14 temperature 30 14400 < th dose independent rect. 18 7
11 511.51 temperature 30 14400 < th dose independent rect. 18 4
15 516.73 temperature 30 14400 > th dose dependent rect. 17 2
43 517.31 temperature 30 14400 > th dose independent rect. 18 1
57 517.86 humidity 70 1440 < th dose independent sin 14 NA
62 519.38 humidity 70 1440 > th dose independent sin 14 NA
80 520.58 humidity 70 1440 < th dose independent rect. 15 16
81 520.59 humidity 70 1440 < th dose independent rect. 15 5
175 522.30 humidity 70 1440 > th dose independent rect. 15 13
179 522.36 humidity 70 1440 > th dose independent rect. 15 10
182 522.39 humidity 70 1440 > th dose independent rect. 15 5
188 522.43 humidity 70 1440 > th dose independent rect. 15 7
193 522.98 humidity 80 1440 < th dose dependent rect. 17 3
198 523.51 temperature 25 14400 > th dose dependent rect. 22 1
209 523.66 humidity 80 1440 < th dose dependent rect. 16 5
226 523.87 temperature 30 14400 > th dose dependent sin 12 NA
228 524.00 temperature 30 1440 < th dose independent sin 13 NA
248 524.32 temperature 30 1440 < th dose independent rect. 14 15
250 524.36 temperature 30 1440 < th dose independent rect. 14 5
256 524.43 temperature 30 1440 < th dose independent rect. 14 11
258 524.44 temperature 30 1440 < th dose independent rect. 14 8
320 525.15 temperature 30 1440 > th dose independent sin 13 NA
324 525.35 temperature 30 1440 > th dose independent rect. 14 5
430 526.16 temperature 30 1440 < th dose independent rect. 17 12
437 526.18 temperature 30 1440 < th dose independent rect. 17 2
445 526.26 temperature 30 1440 < th dose independent rect. 17 5
447 526.32 temperature 30 1440 < th dose independent rect. 17 8
454 526.37 temperature 30 1440 < th dose independent rect. 17 14
466 526.55 temperature 25 1440 > th dose dependent rect. 18 1
473 526.63 temperature 25 1440 > th dose dependent rect. 13 10
487 526.78 temperature 25 1440 > th dose dependent rect. 18 4
488 526.79 temperature 30 1440 > th dose independent rect. 17 2
562 527.17 humidity 80 1440 < th dose dependent sin 15 NA
601 527.60 temperature 30 14400 < th dose independent sin 12 NA
622 527.73 temperature 30 14400 > th dose independent sin 12 NA
729 528.45 temperature 25 1440 > th dose dependent rect. 13 18
736 528.48 humidity 70 720 < th dose independent rect. 18 14
869 529.15 humidity 70 720 < th dose independent rect. 18 2
926 529.62 temperature 25 1440 > th dose dependent sin 15 NA