BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0187600 Os01g0187600|AK109624
(123 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G19500.1 | chr2:8444311-8447301 REVERSE LENGTH=502 129 5e-31
AT4G29740.2 | chr4:14566351-14569132 FORWARD LENGTH=525 110 1e-25
AT3G63440.1 | chr3:23424291-23426265 FORWARD LENGTH=534 106 4e-24
AT5G56970.1 | chr5:23044944-23048245 REVERSE LENGTH=524 103 3e-23
AT5G21482.1 | chr5:7226842-7230052 FORWARD LENGTH=525 102 4e-23
AT2G41510.1 | chr2:17314626-17316861 FORWARD LENGTH=576 99 5e-22
AT1G75450.1 | chr1:28315248-28318064 REVERSE LENGTH=541 99 7e-22
>AT2G19500.1 | chr2:8444311-8447301 REVERSE LENGTH=502
Length = 501
Score = 129 bits (323), Expect = 5e-31, Method: Composition-based stats.
Identities = 54/97 (55%), Positives = 71/97 (73%)
Query: 26 RWDAAMSAVTPEGEEEVFYVVSLLFSAVANDVAALEAQNRRILRFCDLAGIGYKAYLAHY 85
+WD MSA+ PE +E+V Y++ LL SA D+ +E+ N +I+RFC +GI K YL HY
Sbjct: 405 KWDNRMSAMIPEIDEDVIYIIGLLQSATPKDLPEVESVNEKIIRFCKDSGIKIKQYLMHY 464
Query: 86 DSRGDWVRHFGAKWDRFVQRKDKYDPKKLLSPGQDIF 122
S+ DW+ HFG+KWD F +RKD +DPKKLLSPGQDIF
Sbjct: 465 TSKEDWIEHFGSKWDDFSKRKDLFDPKKLLSPGQDIF 501
>AT4G29740.2 | chr4:14566351-14569132 FORWARD LENGTH=525
Length = 524
Score = 110 bits (276), Expect = 1e-25, Method: Composition-based stats.
Identities = 50/99 (50%), Positives = 71/99 (71%), Gaps = 3/99 (3%)
Query: 26 RWDAAMSAVTPEGEEEVFYVVSLLFSAV-ANDVAALEAQNRRILRFCDLAGIGYKAYLAH 84
+W+ MS +TP+ E+VFYV+ LL SA + + LE N ++++FC+ +GI K YL H
Sbjct: 428 KWNNRMSTMTPD--EDVFYVIGLLQSAGGSQNWQELENLNDKVIQFCENSGIKIKEYLMH 485
Query: 85 YDSRGDWVRHFGAKWDRFVQRKDKYDPKKLLSPGQDIFN 123
Y + DWV+HFG KWD F+++K +DPK+LLSPGQDIFN
Sbjct: 486 YTRKEDWVKHFGPKWDDFLRKKIMFDPKRLLSPGQDIFN 524
>AT3G63440.1 | chr3:23424291-23426265 FORWARD LENGTH=534
Length = 533
Score = 106 bits (264), Expect = 4e-24, Method: Composition-based stats.
Identities = 53/106 (50%), Positives = 67/106 (63%), Gaps = 7/106 (6%)
Query: 22 VGGCRWDAAMSAVTPEGEEEVFYVVSLLFSAV-----ANDVAALEAQNRRILRFCDLAGI 76
V +WD SAVTPE EEVFY+V++L SA + V + +NRRIL F + AGI
Sbjct: 423 VNKSKWDNQTSAVTPE--EEVFYLVAILTSASPGSAGKDGVEEILRRNRRILEFSEEAGI 480
Query: 77 GYKAYLAHYDSRGDWVRHFGAKWDRFVQRKDKYDPKKLLSPGQDIF 122
G K YL HY +R +W HFG KW FV+RK +YDP +L+PG IF
Sbjct: 481 GLKQYLPHYTTREEWRSHFGDKWGEFVRRKSRYDPLAILAPGHRIF 526
>AT5G56970.1 | chr5:23044944-23048245 REVERSE LENGTH=524
Length = 523
Score = 103 bits (256), Expect = 3e-23, Method: Composition-based stats.
Identities = 48/97 (49%), Positives = 66/97 (68%), Gaps = 2/97 (2%)
Query: 26 RWDAAMSAVTPEGEEEVFYVVSLLFSAVANDVAALEAQNRRILRFCDLAGIGYKAYLAHY 85
+W+ MSA PE E+VFY V L SA ++ A + +N IL+FC+ A +G YL ++
Sbjct: 423 KWNDRMSAAIPE--EDVFYAVGFLRSAGFDNWEAFDQENMEILKFCEDANMGVIQYLPYH 480
Query: 86 DSRGDWVRHFGAKWDRFVQRKDKYDPKKLLSPGQDIF 122
S+ WVRHFG +W+ FV+RK KYDPK +LSPGQ+IF
Sbjct: 481 SSQEGWVRHFGPRWNIFVERKYKYDPKMILSPGQNIF 517
>AT5G21482.1 | chr5:7226842-7230052 FORWARD LENGTH=525
Length = 524
Score = 102 bits (255), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 67/102 (65%), Gaps = 5/102 (4%)
Query: 26 RWDAAMSAVTPEGEEEVFYVVSLL-FSAVANDVAALE---AQNRRILRFCDLAGIGYKAY 81
RWD S V PE E E+FY+V+LL F V+++E AQN+ I+ +C GI YK Y
Sbjct: 421 RWDDRTSVVIPE-EGEIFYIVALLRFVPPCAKVSSVEKMVAQNQEIVHWCVKNGIDYKLY 479
Query: 82 LAHYDSRGDWVRHFGAKWDRFVQRKDKYDPKKLLSPGQDIFN 123
L HY S+ +W+RHFG +W RFV RK +DP +LSPGQ IFN
Sbjct: 480 LPHYKSQEEWIRHFGNRWSRFVDRKAMFDPMAILSPGQKIFN 521
>AT2G41510.1 | chr2:17314626-17316861 FORWARD LENGTH=576
Length = 575
Score = 99.0 bits (245), Expect = 5e-22, Method: Composition-based stats.
Identities = 45/106 (42%), Positives = 64/106 (60%), Gaps = 7/106 (6%)
Query: 22 VGGCRWDAAMSAVTPEGEEEVFYVVSLLFSAV-----ANDVAALEAQNRRILRFCDLAGI 76
V +W S +TP E++FY+V+ L SAV ND+ L QN+R++ FC A +
Sbjct: 436 VNQSKWKKHTSLITPN--EDIFYLVAFLPSAVPNSSGKNDLEYLLKQNQRVMNFCAAANL 493
Query: 77 GYKAYLAHYDSRGDWVRHFGAKWDRFVQRKDKYDPKKLLSPGQDIF 122
K YL HY+++ +W HFG +W+ F QRK YDP +L+PGQ IF
Sbjct: 494 NVKQYLPHYETQKEWKSHFGKRWETFAQRKQAYDPLAILAPGQRIF 539
>AT1G75450.1 | chr1:28315248-28318064 REVERSE LENGTH=541
Length = 540
Score = 98.6 bits (244), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 68/102 (66%), Gaps = 7/102 (6%)
Query: 26 RWDAAMSAVTPEGEEEVFYVVSLLFSAVAN-----DVAALEAQNRRILRFCDLAGIGYKA 80
+WD SAVTP+ EEVFY+V+LL SA+ + + L+ QNRRIL FC+ A I K
Sbjct: 421 KWDERSSAVTPD--EEVFYLVALLRSALTDGEETQKLEYLKDQNRRILEFCEQAKINVKQ 478
Query: 81 YLAHYDSRGDWVRHFGAKWDRFVQRKDKYDPKKLLSPGQDIF 122
YL H+ ++ +WV HFG KWDRF K ++DP+ +L+ GQ IF
Sbjct: 479 YLPHHATQEEWVAHFGDKWDRFRSLKAEFDPRHILATGQRIF 520
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.139 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,393,903
Number of extensions: 82604
Number of successful extensions: 186
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 7
Length of query: 123
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 37
Effective length of database: 8,748,793
Effective search space: 323705341
Effective search space used: 323705341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 105 (45.1 bits)