BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0187600 Os01g0187600|AK109624
(123 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0187600 Similar to Cytokinin dehydrogenase 1 precursor... 221 7e-59
Os01g0775400 Similar to Cytokinin dehydrogenase 5 precursor... 100 3e-22
Os05g0374200 Similar to Cytokinin dehydrogenase 1 precursor... 99 6e-22
Os02g0220100 93 5e-20
Os08g0460600 Conserved hypothetical protein 93 5e-20
Os01g0940000 FAD linked oxidase, N-terminal domain containi... 86 4e-18
Os02g0220000 79 1e-15
Os10g0483500 FAD linked oxidase, N-terminal domain containi... 72 1e-13
>Os01g0187600 Similar to Cytokinin dehydrogenase 1 precursor (EC 1.5.99.12)
(Cytokinin oxidase 1) (CKO 1) (COX 1) (ZmCKX1)
Length = 123
Score = 221 bits (564), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 108/123 (87%), Positives = 108/123 (87%)
Query: 1 HYXXXXXXXXXXXXXXXTVQYVGGCRWDAAMSAVTPEGEEEVFYVVSLLFSAVANDVAAL 60
HY TVQYVGGCRWDAAMSAVTPEGEEEVFYVVSLLFSAVANDVAAL
Sbjct: 1 HYRRHCHFSRRSSSSRCTVQYVGGCRWDAAMSAVTPEGEEEVFYVVSLLFSAVANDVAAL 60
Query: 61 EAQNRRILRFCDLAGIGYKAYLAHYDSRGDWVRHFGAKWDRFVQRKDKYDPKKLLSPGQD 120
EAQNRRILRFCDLAGIGYKAYLAHYDSRGDWVRHFGAKWDRFVQRKDKYDPKKLLSPGQD
Sbjct: 61 EAQNRRILRFCDLAGIGYKAYLAHYDSRGDWVRHFGAKWDRFVQRKDKYDPKKLLSPGQD 120
Query: 121 IFN 123
IFN
Sbjct: 121 IFN 123
>Os01g0775400 Similar to Cytokinin dehydrogenase 5 precursor (EC 1.5.99.12)
(Cytokinin oxidase 5) (CKO5) (AtCKX5) (AtCKX6)
Length = 534
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 69/104 (66%), Gaps = 8/104 (7%)
Query: 26 RWDAAMSAVTPEGEEEVFYVVSLLFSAV------ANDVAALEAQNRRILRFCDLAGIGYK 79
+WD S VTPE E+VFY+V+ L SAV A + ALE QNR IL FCD AGIG K
Sbjct: 425 KWDPRSSVVTPE--EDVFYLVAFLRSAVPGSTDPAQSLEALERQNREILEFCDEAGIGAK 482
Query: 80 AYLAHYDSRGDWVRHFGAKWDRFVQRKDKYDPKKLLSPGQDIFN 123
YL ++ ++ +W HFGA+W RF + K ++DP+ +L+ GQ IF+
Sbjct: 483 QYLPNHKAQREWEAHFGARWARFARLKAEFDPRAMLATGQGIFD 526
>Os05g0374200 Similar to Cytokinin dehydrogenase 1 precursor (EC 1.5.99.12)
(Cytokinin oxidase 1) (CKO 1) (AtCKX1)
Length = 521
Score = 99.4 bits (246), Expect = 6e-22, Method: Composition-based stats.
Identities = 49/102 (48%), Positives = 63/102 (61%), Gaps = 3/102 (2%)
Query: 22 VGGCRWDAAMSAVTPEGEEEVFYVVSLLFSAVA-NDVAALEAQNRRILRFCDLAGIGYKA 80
V RWD S V P+ EEVFY+V+ L SA+ +++ N RI+ F D AGIG K
Sbjct: 411 VNKSRWDNRTSVVIPD--EEVFYLVAFLSSALGPHNIKHTLDLNYRIIEFSDKAGIGVKQ 468
Query: 81 YLAHYDSRGDWVRHFGAKWDRFVQRKDKYDPKKLLSPGQDIF 122
YL +Y + +W HFGA+WD F QRK YDP +L+PGQ IF
Sbjct: 469 YLPNYTTEQEWQSHFGARWDTFQQRKKAYDPLAILAPGQRIF 510
>Os02g0220100
Length = 524
Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 60/98 (61%), Gaps = 3/98 (3%)
Query: 27 WDAAMSAVTPEGEEEVFYVVSLLFSA-VANDVAALEAQNRRILRFCDLAGIGYKAYLAHY 85
WD M AV +++VFY V LL SA V DV LE +N +L FC IG K YL +Y
Sbjct: 419 WDDCMMAVA--SDDDVFYAVGLLRSAAVIGDVERLEKENEAVLAFCHNEDIGCKQYLPYY 476
Query: 86 DSRGDWVRHFGAKWDRFVQRKDKYDPKKLLSPGQDIFN 123
S+ W RHFGAKW R K KYDP ++LSPGQ IF+
Sbjct: 477 TSQDGWQRHFGAKWSRVADLKAKYDPHRILSPGQRIFS 514
>Os08g0460600 Conserved hypothetical protein
Length = 127
Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 59/102 (57%), Gaps = 7/102 (6%)
Query: 26 RWDAAMSAVTPEGEEEVFYVVSLL-----FSAVANDVAALEAQNRRILRFCDLAGIGYKA 80
RWD A S P GE +FY+V+LL + V L AQN I+ C G YK
Sbjct: 13 RWDPATSVALPNGE--IFYLVALLRFCRPYPGGGPPVDELVAQNNAIIDACRSNGYDYKI 70
Query: 81 YLAHYDSRGDWVRHFGAKWDRFVQRKDKYDPKKLLSPGQDIF 122
Y Y ++ DW RHFGAKW RFV RK +YDP +L+PGQ+IF
Sbjct: 71 YFPSYHAQSDWSRHFGAKWSRFVDRKARYDPLAILAPGQNIF 112
>Os01g0940000 FAD linked oxidase, N-terminal domain containing protein
Length = 529
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 6/105 (5%)
Query: 22 VGGCRWDAAMSAVTPEGEEEVFYVVSLLFSAVAND----VAALEAQNRRILRFCDLAGIG 77
V +WD S V P+ EE+FY+V L SA ++ V N +I+ FC+ G+G
Sbjct: 418 VNRTKWDNRTSVVIPD--EEIFYLVGFLSSAPSSSGHGSVEHAMNLNNKIVDFCEKNGVG 475
Query: 78 YKAYLAHYDSRGDWVRHFGAKWDRFVQRKDKYDPKKLLSPGQDIF 122
K YLA Y ++ W HFGA+W+ F +RK YDP +L+PGQ IF
Sbjct: 476 MKQYLAPYTTQKQWKAHFGARWETFERRKHTYDPLAILAPGQRIF 520
>Os02g0220000
Length = 501
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 27 WDAAMSAVTPEGEEEVFYVVSLLFSAVA-NDVAALEAQNRRILRFCDLAGIGYKAYLAHY 85
WD M+AV+ G +++FYVV LL SAV DV LE +N +L FCD GIG K YL HY
Sbjct: 422 WDDRMTAVS--GNDDMFYVVGLLRSAVVPGDVERLERENEAVLAFCDNEGIGCKQYLPHY 479
Query: 86 DSRGDWVRHFGAKWDRFVQRK 106
S+ W HFGAKW R + K
Sbjct: 480 ASQDGWRSHFGAKWSRVTELK 500
>Os10g0483500 FAD linked oxidase, N-terminal domain containing protein
Length = 527
Score = 71.6 bits (174), Expect = 1e-13, Method: Composition-based stats.
Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 7/104 (6%)
Query: 26 RWDAAMSAVTPEG--EEEVFYVVSLLFSAVANDVAALEAQNRRILRF-----CDLAGIGY 78
+WD S V P+ ++V Y V +L SA +D + +LR +G+G
Sbjct: 409 KWDTNTSVVLPDSGSTDQVMYAVGILRSANPDDGCSHHCLQELLLRHRRLAGAAASGLGA 468
Query: 79 KAYLAHYDSRGDWVRHFGAKWDRFVQRKDKYDPKKLLSPGQDIF 122
K YLAH+ + W RHFG +W+RF RK ++DP+ +L PGQ IF
Sbjct: 469 KQYLAHHPTPAGWRRHFGRRWERFADRKARFDPRCILGPGQGIF 512
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.139 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,796,791
Number of extensions: 132937
Number of successful extensions: 309
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 9
Length of query: 123
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 35
Effective length of database: 12,440,969
Effective search space: 435433915
Effective search space used: 435433915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 149 (62.0 bits)