BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0447300 Os08g0447300|Os08g0447300
(315 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0447300 Protein of unknown function DUF676, hydrolase-... 620 e-178
Os02g0787100 Protein of unknown function DUF676, hydrolase-... 184 5e-47
Os03g0726800 Protein of unknown function DUF676, hydrolase-... 171 8e-43
Os08g0143700 Protein of unknown function DUF676, hydrolase-... 160 1e-39
Os02g0655600 Protein of unknown function DUF676, hydrolase-... 86 4e-17
AK106431 78 1e-14
>Os08g0447300 Protein of unknown function DUF676, hydrolase-like domain
containing protein
Length = 315
Score = 620 bits (1598), Expect = e-178, Method: Compositional matrix adjust.
Identities = 303/315 (96%), Positives = 303/315 (96%)
Query: 1 MGRATATPAHGAHSRWPRAVARLRLAFRSPAPAASGGARWIGCFRPAPPAAVKEAKGKRP 60
MGRATATPAHGAHSRWPRAVARLRLAFRSPAPAASGGARWIGCFRPAPPAAVKEAKGKRP
Sbjct: 1 MGRATATPAHGAHSRWPRAVARLRLAFRSPAPAASGGARWIGCFRPAPPAAVKEAKGKRP 60
Query: 61 EVEKEPARGGGEDVWSXXXXXXXXXXXXFPEHLVVMVNGLVGSADDWKFAAEQFVRRMPE 120
EVEKEPARGGGEDVWS FPEHLVVMVNGLVGSADDWKFAAEQFVRRMPE
Sbjct: 61 EVEKEPARGGGEDVWSAQAEAEVAQGGGFPEHLVVMVNGLVGSADDWKFAAEQFVRRMPE 120
Query: 121 KVIVHRSQCNSATQTFDGVDLMGERLANEVLSVVEQRRGVKKISFVAHSLGGLVARYAIG 180
KVIVHRSQCNSATQTFDGVDLMGERLANEVLSVVEQRRGVKKISFVAHSLGGLVARYAIG
Sbjct: 121 KVIVHRSQCNSATQTFDGVDLMGERLANEVLSVVEQRRGVKKISFVAHSLGGLVARYAIG 180
Query: 181 RLYEPNNKTKSSSEKSRDEGERLEGFIAGLEPMNFITFASPHLGSSGNKQHRLLVRDEKY 240
RLYEPNNKTKSSSEKSRDEGERLEGFIAGLEPMNFITFASPHLGSSGNKQHRLLVRDEKY
Sbjct: 181 RLYEPNNKTKSSSEKSRDEGERLEGFIAGLEPMNFITFASPHLGSSGNKQHRLLVRDEKY 240
Query: 241 PHIVHVDKGATNSNEAEARSDLYDPEEEMIRGLTQVPWERVDVSFQKSSQRLVAHNTIQE 300
PHIVHVDKGATNSNEAEARSDLYDPEEEMIRGLTQVPWERVDVSFQKSSQRLVAHNTIQE
Sbjct: 241 PHIVHVDKGATNSNEAEARSDLYDPEEEMIRGLTQVPWERVDVSFQKSSQRLVAHNTIQE 300
Query: 301 TTLGWAPDREGVKSG 315
TTLGWAPDREGVKSG
Sbjct: 301 TTLGWAPDREGVKSG 315
>Os02g0787100 Protein of unknown function DUF676, hydrolase-like domain
containing protein
Length = 432
Score = 184 bits (468), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 103/196 (52%), Positives = 125/196 (63%), Gaps = 16/196 (8%)
Query: 38 ARWIGCFRPAPPAAVKEAKGKRPEVEKEPARGGGEDVWSXXXXXXXXXXXXFPEHLVVMV 97
A W+ CF APP P+ + A G D + +HLVVMV
Sbjct: 95 ANWLRCF-VAPPL---------PQPSEAEASAEGRDAGNREEEEAGNEEA---DHLVVMV 141
Query: 98 NGLVGSADDWKFAAEQFVRRMPEKVIVHRSQCNSATQTFDGVDLMGERLANEVLSVVEQR 157
NGL GS+ DWKFAAEQFV+R+P KV VHRSQCN + T+DGVDLMGERLA EV VV++R
Sbjct: 142 NGLYGSSADWKFAAEQFVKRLPGKVFVHRSQCNHSKLTYDGVDLMGERLAEEVRQVVQRR 201
Query: 158 RGVKKISFVAHSLGGLVARYAIGRLYEPNNKTKSSSEKSRDEGERLE---GFIAGLEPMN 214
++KISFVAHSLGGLV RYAIG+LY+P+ ++S +K E G IAGLEP+N
Sbjct: 202 SNLQKISFVAHSLGGLVTRYAIGKLYDPSINEEASLDKENFSNELRTSDGGKIAGLEPIN 261
Query: 215 FITFASPHLGSSGNKQ 230
FI A+PHLGS NKQ
Sbjct: 262 FIAVATPHLGSRWNKQ 277
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Query: 232 RLLVRDEKYPHIVHVDKGATNSNEAE--ARSDLYDPEEE-MIRGLTQVPWERVDVSFQKS 288
+L D+KYPHI+HVDKG + ++ E + L D EE MI GLTQVPWERVDV F KS
Sbjct: 348 QLTPSDKKYPHIIHVDKGNSEHHQQEESVEASLTDSMEEVMIHGLTQVPWERVDVCFHKS 407
Query: 289 SQRLVAHNTIQ 299
R AH+ IQ
Sbjct: 408 WLRYNAHHNIQ 418
>Os03g0726800 Protein of unknown function DUF676, hydrolase-like domain
containing protein
Length = 386
Score = 171 bits (432), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 104/230 (45%), Positives = 142/230 (61%), Gaps = 20/230 (8%)
Query: 90 PEHLVVMVNGLVGSADDWKFAAEQFVRRMPEKVIVHRSQCNSATQTFDGVDLMGERLANE 149
P HLVV VNG+VGSA++W++AA+ F+++ PE V+VH S CN A +TFDGVD+MG RLA E
Sbjct: 53 PTHLVVTVNGIVGSAENWRYAAKHFIKKHPEDVVVHCSGCNGAVRTFDGVDVMGTRLAEE 112
Query: 150 VLSVVEQRRGVKKISFVAHSLGGLVARYAIGRLYEPNNKTKSSSEKSRD----EGERL-- 203
VLS+V++R ++KISFVAHSLGGL+ARYAI LY+ + S E + +L
Sbjct: 113 VLSLVQRRPELQKISFVAHSLGGLIARYAIALLYKSATEIDSHEEHEKQITDVSSNQLID 172
Query: 204 EGFIAGLEPMNFITFASPHLGSSGNKQHRLLVRDEKYPHIVHVDKGATNSNEAEARSD-- 261
G IAGLEP+NFITFA+PHLG+ +KQ LL K ++K A + RS
Sbjct: 173 RGKIAGLEPINFITFATPHLGTRSHKQIPLLRGSYK------LEKMAYRISWIAGRSGKH 226
Query: 262 --LYDPEEEMIRGLTQVPWERVDVSFQ---KSSQRLVAH-NTIQETTLGW 305
L D E+ L Q+ + D+ F +S +R VA+ N + +GW
Sbjct: 227 LFLKDIEDGKPPLLLQMVTDYGDLHFMSALRSFKRRVAYSNICNDFIVGW 276
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 12/95 (12%)
Query: 225 SSGNKQHRL-----LVRDEKYPHIVHVDKGATNSNEAEARSDLY------DPEEEMIRGL 273
SS QH L + KYPH+V+V+K + + S +Y + EE M++GL
Sbjct: 279 SSIRHQHELPKPQNFINHVKYPHVVYVEKPKVQDTDF-SDSMIYQAKNTSEMEELMLKGL 337
Query: 274 TQVPWERVDVSFQKSSQRLVAHNTIQETTLGWAPD 308
++PWERVDVSF+KS QR+ AH+TIQ T + D
Sbjct: 338 NRIPWERVDVSFKKSRQRIFAHSTIQVKTYFFNSD 372
>Os08g0143700 Protein of unknown function DUF676, hydrolase-like domain
containing protein
Length = 350
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 115/171 (67%), Gaps = 17/171 (9%)
Query: 65 EPARGGGEDVWSXXXXXXXXXXXXFPEHLVVMVNGLVGSADDWKFAAEQFVRRMPEKVIV 124
E + GG DVWS P+HL+VMV+G++GS DW++AA +FV+++P+ VIV
Sbjct: 15 EESASGGVDVWSDAVSSHD------PDHLLVMVHGILGSNADWQYAANEFVKQLPDDVIV 68
Query: 125 HRSQCNSATQTFDGVDLMGERLANEVLSVVEQRRGVKKISFVAHSLGGLVARYAIGRLY- 183
H S+ N T T +GVD+MGERLA+EV+ V+ ++ + KISF+AHS+GGL ARYAI +LY
Sbjct: 69 HCSEKNINTLTLEGVDVMGERLADEVIDVIIRKPELTKISFLAHSVGGLAARYAIAKLYR 128
Query: 184 EPNNKTKSSSEKSRDEGERLEGFIAGLEPMNFITFASPHLGSSGNKQHRLL 234
P++ +KS + +G I GLE MNFIT A+PHLGS GN Q LL
Sbjct: 129 HPSDTSKSET----------KGTIGGLEAMNFITVATPHLGSRGNNQVPLL 169
>Os02g0655600 Protein of unknown function DUF676, hydrolase-like domain
containing protein
Length = 138
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 47/60 (78%)
Query: 90 PEHLVVMVNGLVGSADDWKFAAEQFVRRMPEKVIVHRSQCNSATQTFDGVDLMGERLANE 149
P+HLVVMV+G+VGSA DWKF AEQF + + +KVIVHRS N T DGVD+MGERLA E
Sbjct: 30 PDHLVVMVHGIVGSAADWKFGAEQFEKLLSDKVIVHRSNRNMYKLTLDGVDVMGERLAQE 89
>AK106431
Length = 67
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/37 (94%), Positives = 37/37 (100%)
Query: 230 QHRLLVRDEKYPHIVHVDKGATNSNEAEARSDLYDPE 266
+HRLLVR+EKYPHIVHVDKGATNSNEAEARSDLYDPE
Sbjct: 17 KHRLLVRNEKYPHIVHVDKGATNSNEAEARSDLYDPE 53
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,256,011
Number of extensions: 505656
Number of successful extensions: 1736
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1731
Number of HSP's successfully gapped: 8
Length of query: 315
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 214
Effective length of database: 11,762,187
Effective search space: 2517108018
Effective search space used: 2517108018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)