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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0787100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF676, hydrolase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0272) R2 : 0.0238
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.191 (0.0573) R2dN8 : 0.0308 R2N8 : 0.0238
σ : 0.513
deviance : 120.68
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
100.95 0.472 11.4 -0.408 0.472 -0.818 -0.216 0.64 -0.0103 4.36 24.72 10 -- --
101.47 0.473 11.4 -0.318 0.477 -0.884 0.0263 -- 0.00697 4.14 24.72 10 -- --
100.96 0.472 11.4 -0.393 0.471 -0.837 -- 0.534 -0.00791 4.21 24.72 10 -- --
101.43 0.469 11.3 -0.32 0.467 -0.893 -- -- 0.0146 4.19 24.38 2 -- --
111.67 0.495 11.4 -0.339 -- -0.653 -- 0.617 0.0497 -- 24.09 13 -- --
112.73 0.498 11.3 -0.11 0.379 -- -0.364 -- 0.17 5.71 -- -- -- --
112.99 0.498 11.3 -0.113 0.378 -- -- -- 0.171 5.39 -- -- -- --
112.32 0.494 11.3 -0.257 -- -0.709 -- -- 0.0666 -- 24.1 2 -- --
103.88 0.475 11.3 -- 0.453 -0.774 -- -- 0.0712 4.35 24.34 2 -- --
120.41 0.513 11.3 -0.1 -- -- -- -- 0.18 -- -- -- -- --
113.32 0.498 11.3 -- 0.376 -- -- -- 0.183 5.4 -- -- -- --
113.92 0.497 11.3 -- -- -0.626 -- -- 0.108 -- 24.01 2 -- --
120.68 0.513 11.3 -- -- -- -- -- 0.191 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 87.46 atmosphere 1005.0 30 > th dose dependent rect. 16 1
2 87.52 wind 5.0 30 > th dose dependent rect. 16 1
3 87.64 atmosphere 1005.0 30 > th dose independent rect. 16 1
4 87.87 humidity 60.0 30 > th dose independent rect. 16 1
5 88.05 temperature 30.0 30 < th dose independent rect. 16 1
7 88.21 wind 5.0 30 > th dose independent rect. 16 1
8 88.67 humidity 50.0 30 > th dose dependent rect. 16 1
20 90.65 radiation 20.0 30 < th dose dependent rect. 16 1
22 90.96 radiation 10.0 10 < th dose independent rect. 16 1
28 91.51 humidity 80.0 30 < th dose independent rect. 16 1
30 91.56 temperature 25.0 30 > th dose independent rect. 16 1
31 91.60 radiation 1.0 30 > th dose independent rect. 16 1
36 91.69 wind 9.0 30 < th dose independent rect. 16 1
37 91.69 temperature 10.0 30 > th dose independent rect. 16 1
39 91.69 atmosphere 1010.0 30 < th dose independent rect. 16 1
41 91.69 radiation 40.0 30 < th dose independent rect. 16 1
42 91.69 precipitation 0.1 30 < th dose independent rect. 16 1
43 91.69 temperature 10.0 30 > th dose independent rect. 17 23
44 91.69 precipitation 0.1 30 < th dose dependent rect. 16 1
52 92.59 temperature 10.0 1440 > th dose independent rect. 17 1
56 92.59 radiation 30.0 1440 < th dose independent rect. 17 1
62 92.59 temperature 10.0 1440 > th dose independent rect. 18 23
68 92.64 temperature 10.0 30 > th dose dependent rect. 16 1
69 92.64 radiation 1.0 30 > th dose dependent rect. 16 1
72 92.70 temperature 30.0 30 < th dose dependent rect. 16 1
79 93.05 atmosphere 1015.0 30 < th dose dependent rect. 16 1
98 93.37 wind 9.0 30 < th dose dependent rect. 16 1
157 94.01 humidity 90.0 30 < th dose dependent rect. 16 1
170 94.28 temperature 10.0 30 > th dose dependent rect. 17 23
190 94.80 wind 9.0 30 < th dose independent rect. 17 23
202 95.89 atmosphere 995.0 30 > th dose independent rect. 17 23
204 96.28 temperature 20.0 720 > th dose dependent rect. 17 4
207 96.53 temperature 20.0 90 > th dose dependent rect. 17 13
221 97.32 temperature 25.0 720 > th dose independent rect. 17 4
242 97.91 temperature 10.0 720 > th dose dependent rect. 17 8
243 97.92 precipitation 0.1 30 < th dose independent rect. 17 23
244 97.92 precipitation 0.1 30 < th dose dependent rect. 17 23
247 97.95 temperature 20.0 270 > th dose dependent sin 12 NA
268 98.21 radiation 1.0 43200 < th dose dependent rect. 19 5
277 98.39 temperature 20.0 720 > th dose dependent sin 15 NA
283 98.44 humidity 90.0 14400 > th dose dependent rect. 21 3
284 98.46 radiation 1.0 43200 < th dose dependent rect. 21 3
293 98.56 humidity 90.0 14400 > th dose dependent rect. 22 1
296 98.64 temperature 15.0 10 > th dose dependent sin 10 NA
356 98.99 temperature 30.0 10 < th dose dependent sin 10 NA
404 99.21 temperature 30.0 720 < th dose dependent rect. 17 8
409 99.23 temperature 25.0 720 < th dose independent rect. 17 6
428 99.38 temperature 25.0 4320 > th dose dependent rect. 17 2
449 99.49 temperature 30.0 720 < th dose dependent rect. 17 6
469 99.51 temperature 10.0 720 > th dose dependent rect. 11 18
514 99.68 temperature 20.0 10 > th dose independent rect. 17 23
529 99.73 temperature 25.0 4320 > th dose independent rect. 17 1
530 99.73 temperature 25.0 4320 > th dose independent rect. 17 3
543 99.76 temperature 25.0 10 < th dose dependent rect. 16 16
544 99.77 temperature 25.0 4320 < th dose independent rect. 17 3
597 99.93 humidity 90.0 14400 < th dose independent rect. 21 2
643 100.04 radiation 1.0 14400 < th dose dependent rect. 4 1
659 100.08 wind 3.0 43200 < th dose dependent rect. 8 2
663 100.09 radiation 1.0 14400 < th dose dependent rect. 2 3
668 100.10 humidity 90.0 14400 < th dose independent rect. 18 1
671 100.11 humidity 90.0 14400 > th dose independent rect. 21 2
691 100.12 wind 9.0 43200 < th dose independent rect. 18 21
710 100.15 temperature 25.0 10 < th dose dependent rect. 16 20
732 100.21 radiation 1.0 14400 > th dose independent rect. 18 11
738 100.23 humidity 90.0 14400 > th dose dependent sin 15 NA
747 100.25 wind 9.0 43200 > th dose independent rect. 18 21
770 100.31 atmosphere 995.0 43200 < th dose dependent rect. 15 1
815 100.40 radiation 1.0 43200 < th dose dependent rect. 19 9
831 100.41 temperature 25.0 10 < th dose dependent rect. 14 22
858 100.46 temperature 10.0 4320 > th dose dependent rect. 17 2
859 100.46 temperature 30.0 720 < th dose dependent rect. 19 2
869 100.48 wind 3.0 43200 < th dose independent rect. 9 1
870 100.48 temperature 25.0 4320 > th dose independent rect. 19 1
875 100.48 humidity 90.0 14400 < th dose independent rect. 17 8
898 100.51 atmosphere 995.0 43200 < th dose independent rect. 14 2
914 100.52 radiation 1.0 43200 < th dose dependent rect. 19 7
915 100.52 wind 7.0 43200 > th dose dependent rect. 5 10
928 100.53 temperature 25.0 90 < th dose dependent rect. 11 22
936 100.55 wind 3.0 43200 > th dose independent rect. 9 1
944 100.55 wind 9.0 43200 > th dose dependent rect. 18 13
948 100.55 temperature 25.0 10 < th dose dependent rect. 12 20
954 100.56 wind 9.0 43200 > th dose dependent rect. 19 2
959 100.57 radiation 1.0 14400 > th dose independent rect. 18 1