BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0787100 Os02g0787100|Os02g0787100
(432 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G25770.1 | chr4:13117821-13119982 REVERSE LENGTH=419 336 1e-92
AT5G51180.1 | chr5:20797360-20799929 FORWARD LENGTH=358 298 4e-81
AT1G10040.1 | chr1:3276108-3278464 REVERSE LENGTH=413 283 2e-76
AT1G29120.5 | chr1:10174481-10178143 FORWARD LENGTH=457 241 6e-64
>AT4G25770.1 | chr4:13117821-13119982 REVERSE LENGTH=419
Length = 418
Score = 336 bits (862), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 172/308 (55%), Positives = 213/308 (69%), Gaps = 28/308 (9%)
Query: 136 HLVVMVNGLYGSSADWKFAAEQFVKRLPGKVFVHRSQCNHSKLTYDGVDLMGERLAEEVR 195
HLVVMVNG+ GS+ADWK+AAEQFVK+ P KV VHRS+ N + LT+DGVD MGERLA EV
Sbjct: 93 HLVVMVNGIVGSAADWKYAAEQFVKKFPDKVLVHRSESNSATLTFDGVDKMGERLANEVL 152
Query: 196 QVVQRRSNLQKISFVAHSLGGLVTRYAIGKLYDPSINEEASLDKENFSNELRTSDGGKIA 255
VV+ RS L+KISFVAHSLGGLV RYAIGKLY+ + +D + ++ +++ GG+IA
Sbjct: 153 GVVKHRSGLKKISFVAHSLGGLVARYAIGKLYE----QPGEVDSLDSPSKEKSARGGEIA 208
Query: 256 GLEPINFIAVATPHLGSRWNKQLPFLFGVPLLERTAAVTAHFIVGRTGKHLFLTDSDDGK 315
GLEP+NFI ATPHLGSR ++Q P L G+P LERTA+ TAH GRTGKHLFL D+DDG
Sbjct: 209 GLEPMNFITFATPHLGSRGHRQFPILCGLPFLERTASQTAHLAAGRTGKHLFLVDNDDGN 268
Query: 316 PPLLLRMAEDCDDGKFMSALRSFKRRVAYANL----------------------QLTPSD 353
PLL+RMA D DD KF+SAL +FKRRVAYAN+ L +D
Sbjct: 269 APLLIRMATDSDDLKFISALNAFKRRVAYANVNFDSMVGWRTSSIRRPNELPKPNLLATD 328
Query: 354 KKYPHIIHVDKGNSEHH--QQEESVEASLTDSMEEVMIHGLTQVPWERVDVCFHKSWLRY 411
YPHI++V++GN ++ Q +V +EE MIHGL+Q+ WERVDV FH S RY
Sbjct: 329 PNYPHIVYVERGNVDNGSCQSTSTVVTEQDTDLEEEMIHGLSQLSWERVDVSFHNSKQRY 388
Query: 412 NAHHNIQI 419
AH IQ+
Sbjct: 389 VAHSTIQV 396
>AT5G51180.1 | chr5:20797360-20799929 FORWARD LENGTH=358
Length = 357
Score = 298 bits (763), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 158/305 (51%), Positives = 204/305 (66%), Gaps = 25/305 (8%)
Query: 136 HLVVMVNGLYGSSADWKFAAEQFVKRLPGKVFVHRSQCNHSKLTYDGVDLMGERLAEEVR 195
HLVVMV+G+ GS+ DWKF AEQFVK++P KVFVH S+ N S LT DGVD+MGERLA EV
Sbjct: 35 HLVVMVHGILGSTDDWKFGAEQFVKKMPDKVFVHCSEKNVSALTLDGVDVMGERLAAEVL 94
Query: 196 QVVQRRSNLQKISFVAHSLGGLVTRYAIGKLYDPSINEEASLDKENFSNELRTSDGGKIA 255
++QR+ N+ KISFVAHSLGGL RYAIGKLY P+ E+ K++ ++ + + G I
Sbjct: 95 DIIQRKPNICKISFVAHSLGGLAARYAIGKLYKPANQEDV---KDSVADSSQETPKGTIC 151
Query: 256 GLEPINFIAVATPHLGSRWNKQLPFLFGVPLLERTAAVTAHFIVGRTGKHLFLTDSDDGK 315
GLE +NFI VATPHLGS NKQ+PFLFG +E+ A + H+I RTG+HLFL D ++GK
Sbjct: 152 GLEAMNFITVATPHLGSMGNKQVPFLFGFSSIEKVAGLIIHWIFKRTGRHLFLKDEEEGK 211
Query: 316 PPLLLRMAEDCDDGKFMSALRSFKRRVAYANLQ-------LTPS--------------DK 354
PPLL RM ED DD F+SALR+FKRRVAY+N+ T S ++
Sbjct: 212 PPLLRRMVEDTDDCHFISALRAFKRRVAYSNVGHDHVVGWKTASIRRDSELPKWEDSLNE 271
Query: 355 KYPHIIHVDKGNSEHHQQEESVEASLTDSMEEVMIHGLTQVPWERVDVCFHKSWLRYNAH 414
KYPHI++ + + + E + +D +EE MI GL+ V WE+VDV FH S R+ AH
Sbjct: 272 KYPHIVYEELCKACDMEDIPEGE-NHSDDIEEEMIKGLSSVSWEKVDVSFHSSRQRFAAH 330
Query: 415 HNIQI 419
IQ+
Sbjct: 331 SVIQV 335
>AT1G10040.1 | chr1:3276108-3278464 REVERSE LENGTH=413
Length = 412
Score = 283 bits (723), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 151/311 (48%), Positives = 200/311 (64%), Gaps = 28/311 (9%)
Query: 136 HLVVMVNGLYGSSADWKFAAEQFVKRLPGKVFVHRSQCNHSKLTYDGVDLMGERLAEEVR 195
HLVVMVNGL GS+ +W+FAA+Q +K+ P + VH S+ NHS T+DGVD+MGERLAEEVR
Sbjct: 81 HLVVMVNGLIGSAQNWRFAAKQMLKKYPQDLLVHCSKRNHSTQTFDGVDVMGERLAEEVR 140
Query: 196 QVVQRRSNLQKISFVAHSLGGLVTRYAIGKLYDPSINEEASLDKENFSNELRTSD-GGKI 254
V++R +LQKISFV HSLGGL+ RYAIG+LY+ EE + ++ ++ + +I
Sbjct: 141 SVIKRHPSLQKISFVGHSLGGLIARYAIGRLYEQESREELPHNSDDIGDKCSIEEPKARI 200
Query: 255 AGLEPINFIAVATPHLGSRWNKQLPFLFGVPLLERTAAVTAHFIVGRTGKHLFLTDSDDG 314
AGLEP+ FI ATPHLGSR +KQ+P G LER A + +G+TGKHLFL DSD G
Sbjct: 201 AGLEPVYFITSATPHLGSRGHKQVPLFSGSYTLERLATRMSG-CLGKTGKHLFLADSDGG 259
Query: 315 KPPLLLRMAEDCDDGKFMSALRSFKRRVAYAN----------------------LQLTPS 352
KPPLLLRM +D D KF+SAL+ FKRR+AYAN LQ P
Sbjct: 260 KPPLLLRMVKDSRDLKFISALQCFKRRIAYANTSFDHLVGWSTSSIRRHNELPKLQRGPV 319
Query: 353 DKKYPHIIHVDKGNSEHHQQEESVEASLTD----SMEEVMIHGLTQVPWERVDVCFHKSW 408
++KYPHI++V+ ++ + +E+ MEE MI LT++ WERVDV F +
Sbjct: 320 NEKYPHIVNVEAPDTASNYEEDHSRTKADRFKNLDMEEEMIRELTKLSWERVDVSFRGTL 379
Query: 409 LRYNAHHNIQI 419
R+ AH+ IQ+
Sbjct: 380 QRFLAHNTIQV 390
>AT1G29120.5 | chr1:10174481-10178143 FORWARD LENGTH=457
Length = 456
Score = 241 bits (615), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 137/326 (42%), Positives = 193/326 (59%), Gaps = 46/326 (14%)
Query: 136 HLVVMVNGLYGSSADWKFAAEQFVKRLPGKVFVHRSQCNHSKLTYDGVDLMGERLAEEVR 195
HL+V+V+G+ S +DW + + +RL + ++ S N T+ G+D G+RLAEEVR
Sbjct: 102 HLLVLVHGILASPSDWLYVEAELKRRLGRRFLIYASSSNTFTKTFGGIDGAGKRLAEEVR 161
Query: 196 QVVQRRSNLQKISFVAHSLGGLVTRYAIGKLYDPSINE--EASLDKENFSNELRTSDGGK 253
QVVQ+ +L+KISF+AHSLGGL +R+A+ LY ++ + + ++ + SN LR G+
Sbjct: 162 QVVQKSKSLKKISFLAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSNLLR----GR 217
Query: 254 IAGLEPINFIAVATPHLGSRWNKQLPFLFGVPLLERTAAVTAHFIVGRTGKHLFLTDSDD 313
IAGLEPINFI +ATPHLG R KQLPFL GVP+LE+ AA A F VGRTG LFLTD
Sbjct: 218 IAGLEPINFITLATPHLGVRGRKQLPFLLGVPILEKLAAPIAPFFVGRTGSQLFLTDGKA 277
Query: 314 GKPPLLLRMAEDCDDGKFMSALRSFKRRVAYANLQ-------------------LTPSDK 354
KPPLLLRMA D +D KF+SAL +F+ R+ YAN+ + PS +
Sbjct: 278 DKPPLLLRMASDGEDLKFLSALGAFRSRIIYANVSYDLDMVGWRTSSIRRETELIKPSRR 337
Query: 355 K---YPHIIHVD-----KGNSEHH-----------QQEESVEASLT--DSMEEVMIHGLT 393
Y H++ V+ + H Q S + +L + +EE MI GL
Sbjct: 338 SLDGYKHVVDVEYCPPVSSDGAHFPPEAAKAKEAAQSSPSPQNTLEYHEIVEEEMIRGLQ 397
Query: 394 QVPWERVDVCFHKSWLRYNAHHNIQI 419
++ W++VDV FH ++ Y AH+NI +
Sbjct: 398 RLGWKKVDVSFHSTFWPYLAHNNIHV 423
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,561,317
Number of extensions: 291685
Number of successful extensions: 818
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 809
Number of HSP's successfully gapped: 4
Length of query: 432
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 331
Effective length of database: 8,337,553
Effective search space: 2759730043
Effective search space used: 2759730043
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)