Os08g0447300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF676, hydrolase-like domain containing protein.
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Os08g0447300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF676, hydrolase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.12 | 0.245 | 10.4 | -0.248 | 0.527 | -0.659 | 0.122 | -1.15 | 0.0176 | 5.53 | 27.4 | 10 | -- | -- |
| 29.12 | 0.251 | 10.4 | -0.417 | 0.544 | -0.723 | -0.0566 | -- | 0.0115 | 5.55 | 41.5 | 4 | -- | -- |
| 27.14 | 0.244 | 10.4 | -0.246 | 0.522 | -0.649 | -- | -1.13 | 0.0189 | 5.55 | 27.31 | 10 | -- | -- |
| 29.1 | 0.251 | 10.4 | -0.435 | 0.544 | -0.749 | -- | -- | 0.000897 | 5.52 | 54.55 | 3 | -- | -- |
| 39.27 | 0.293 | 10.4 | -0.211 | -- | -0.481 | -- | -1.06 | 0.0676 | -- | 25.3 | 3 | -- | -- |
| 34.51 | 0.275 | 10.4 | -0.29 | 0.432 | -- | 0.0593 | -- | 0.107 | 7 | -- | -- | -- | -- |
| 34.52 | 0.275 | 10.4 | -0.289 | 0.433 | -- | -- | -- | 0.107 | 6.97 | -- | -- | -- | -- |
| 41.3 | 0.301 | 10.4 | -0.371 | -- | -0.409 | -- | -- | 0.0305 | -- | 25.6 | 4 | -- | -- |
| 33.61 | 0.27 | 10.4 | -- | 0.5 | -0.542 | -- | -- | 0.0744 | 5.89 | 73.67 | 2 | -- | -- |
| 44.36 | 0.311 | 10.4 | -0.28 | -- | -- | -- | -- | 0.115 | -- | -- | -- | -- | -- |
| 36.72 | 0.283 | 10.4 | -- | 0.43 | -- | -- | -- | 0.139 | 7.01 | -- | -- | -- | -- |
| 44.69 | 0.312 | 10.4 | -- | -- | -0.298 | -- | -- | 0.0919 | -- | 25.6 | 4 | -- | -- |
| 46.43 | 0.318 | 10.4 | -- | -- | -- | -- | -- | 0.146 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.25 | temperature | 20 | 10 | > th | dose dependent | sin | 7 | NA |
| 5 | 23.71 | temperature | 30 | 10 | < th | dose dependent | sin | 6 | NA |
| 8 | 23.73 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 14 |
| 9 | 23.74 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 15 |
| 27 | 24.46 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 15 |
| 35 | 24.76 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 16 |
| 52 | 24.95 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 19 |
| 54 | 25.04 | temperature | 25 | 90 | > th | dose independent | rect. | 20 | 15 |
| 73 | 25.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 7 |
| 107 | 25.61 | temperature | 20 | 90 | > th | dose dependent | rect. | 5 | 6 |
| 148 | 25.99 | temperature | 25 | 90 | > th | dose independent | sin | 8 | NA |
| 177 | 26.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 7 |
| 189 | 26.29 | radiation | 20 | 10 | < th | dose dependent | sin | 7 | NA |
| 202 | 26.36 | temperature | 25 | 90 | > th | dose independent | rect. | 5 | 6 |
| 208 | 26.39 | temperature | 25 | 90 | < th | dose independent | sin | 8 | NA |
| 222 | 26.48 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 3 |
| 243 | 26.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 19 |
| 265 | 26.68 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 7 |
| 360 | 27.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 2 |
| 438 | 27.17 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 440 | 27.18 | temperature | 20 | 10 | > th | dose dependent | rect. | 18 | 18 |
| 448 | 27.20 | radiation | 10 | 90 | < th | dose dependent | sin | 7 | NA |
| 543 | 27.40 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 19 |
| 553 | 27.42 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 3 |
| 568 | 27.44 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 579 | 27.46 | temperature | 25 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 590 | 27.49 | radiation | 10 | 10 | < th | dose dependent | rect. | 1 | 16 |
| 595 | 27.51 | wind | 9 | 270 | < th | dose dependent | rect. | 4 | 7 |
| 615 | 27.55 | radiation | 10 | 10 | < th | dose dependent | rect. | 1 | 14 |
| 617 | 27.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 633 | 27.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 646 | 27.60 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 8 |
| 659 | 27.62 | temperature | 25 | 90 | < th | dose independent | rect. | 24 | 17 |
| 703 | 27.68 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 726 | 27.74 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 742 | 27.77 | radiation | 10 | 90 | < th | dose dependent | rect. | 1 | 14 |
| 763 | 27.81 | temperature | 25 | 10 | > th | dose independent | rect. | 5 | 7 |
| 789 | 27.84 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 21 |
| 818 | 27.88 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 822 | 27.89 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 827 | 27.89 | radiation | 10 | 90 | < th | dose dependent | rect. | 23 | 16 |
| 828 | 27.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 842 | 27.92 | radiation | 1 | 270 | > th | dose independent | sin | 9 | NA |
| 854 | 27.93 | wind | 1 | 270 | > th | dose independent | rect. | 24 | 15 |
| 881 | 27.96 | radiation | 1 | 270 | > th | dose independent | rect. | 5 | 4 |
| 887 | 27.97 | radiation | 1 | 270 | < th | dose independent | sin | 10 | NA |
| 899 | 27.97 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 20 |
| 1000 | 28.07 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 12 |