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Os02g0655600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF676, hydrolase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.61 (0.0148) R2 : 0.66
β1 : -1.38 (0.0541) R2dD : 0.502 R2D : 0.422
β2 : 0.607 (0.0384) R2dC : 0.187 R2C : 0.155
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.248 (0.0316) R2dN8 : 0.0616 R2N8 : -0.0167
σ : 0.278
deviance : 35.23
__
_____
C
peak time of C : 5.22
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
28.74 0.252 9.6 -1.38 0.57 0.427 0.317 -0.393 -0.224 7.36 19.33 79 -- --
29.32 0.252 9.6 -1.37 0.572 0.446 0.495 -- -0.227 7.57 19.32 79 -- --
29 0.251 9.6 -1.39 0.574 0.424 -- -0.437 -0.229 7.32 19.37 79 -- --
29.95 0.255 9.6 -1.36 0.57 0.422 -- -- -0.226 7.32 19.42 79 -- --
34.77 0.275 9.62 -1.42 -- 0.687 -- 0.251 -0.196 -- 8.891 631 -- --
35.18 0.278 9.61 -1.38 0.606 -- 0.147 -- -0.247 5.26 -- -- -- --
35.23 0.278 9.61 -1.38 0.607 -- -- -- -0.248 5.22 -- -- -- --
33.91 0.271 9.62 -1.36 -- 0.696 -- -- -0.202 -- 3.05 637 -- --
76.73 0.408 9.56 -- 0.541 0.468 -- -- -0.0446 7.38 20 91 -- --
54.5 0.345 9.62 -1.36 -- -- -- -- -0.233 -- -- -- -- --
85.29 0.432 9.58 -- 0.583 -- -- -- -0.0943 5.3 -- -- -- --
77.85 0.411 9.57 -- -- 0.832 -- -- 0.00452 -- 10.06 659 -- --
103.06 0.474 9.58 -- -- -- -- -- -0.082 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.19 radiation 20.0 90 < th dose independent rect. 12 22
5 27.46 radiation 40.0 90 < th dose dependent rect. 12 23
9 27.65 radiation 30.0 270 < th dose independent rect. 12 19
12 27.76 radiation 40.0 270 < th dose dependent rect. 2 16
13 27.79 radiation 10.0 270 < th dose independent rect. 3 15
14 27.79 radiation 10.0 270 < th dose independent rect. 2 17
21 27.84 radiation 40.0 270 < th dose dependent rect. 13 18
22 27.85 radiation 20.0 90 < th dose independent rect. 15 19
37 28.04 radiation 10.0 10 < th dose independent rect. 6 16
55 28.21 radiation 10.0 270 < th dose independent rect. 2 8
58 28.23 radiation 10.0 30 < th dose independent sin 22 NA
68 28.26 radiation 10.0 270 < th dose independent rect. 23 21
71 28.28 radiation 40.0 270 < th dose independent rect. 2 16
88 28.35 radiation 30.0 270 < th dose dependent rect. 2 8
89 28.35 radiation 20.0 10 < th dose dependent rect. 6 16
101 28.41 temperature 10.0 270 > th dose dependent rect. 1 7
103 28.44 radiation 20.0 90 < th dose independent rect. 17 17
115 28.49 radiation 40.0 90 < th dose dependent rect. 15 19
123 28.52 radiation 10.0 10 < th dose independent rect. 17 23
130 28.54 wind 1.0 270 > th dose independent rect. 7 8
136 28.56 temperature 15.0 270 > th dose dependent rect. 2 5
175 28.67 radiation 20.0 270 < th dose dependent sin 4 NA
178 28.67 radiation 40.0 10 < th dose dependent rect. 12 22
185 28.70 radiation 10.0 10 < th dose independent rect. 4 18
216 28.79 radiation 10.0 270 < th dose independent sin 4 NA
225 28.81 radiation 10.0 30 < th dose independent rect. 6 14
259 28.88 radiation 10.0 30 > th dose independent rect. 9 8
273 28.90 temperature 10.0 270 > th dose independent rect. 7 8
274 28.90 atmosphere 1015.0 270 < th dose independent rect. 7 8
275 28.90 precipitation 0.1 270 < th dose independent rect. 7 8
276 28.90 temperature 10.0 270 > th dose independent rect. 15 16
277 28.90 precipitation 0.1 270 < th dose dependent rect. 7 8
282 28.91 wind 9.0 270 < th dose independent rect. 7 8
300 28.95 atmosphere 995.0 270 > th dose independent rect. 7 8
308 28.96 radiation 20.0 90 < th dose independent no NA NA
340 29.01 temperature 15.0 270 > th dose independent rect. 3 16
346 29.02 radiation 20.0 270 < th dose dependent rect. 23 22
372 29.05 wind 9.0 270 < th dose independent rect. 15 16
378 29.06 radiation 40.0 270 < th dose independent rect. 11 9
383 29.06 temperature 10.0 270 > th dose dependent rect. 15 16
403 29.09 radiation 1.0 270 > th dose dependent sin 5 NA
407 29.09 radiation 20.0 10 < th dose dependent rect. 6 14
447 29.16 radiation 1.0 270 > th dose independent rect. 7 8
453 29.17 radiation 20.0 90 < th dose independent rect. 15 23
456 29.18 precipitation 0.1 270 < th dose independent rect. 15 16
461 29.18 radiation 1.0 90 > th dose dependent rect. 8 9
463 29.18 precipitation 0.1 270 < th dose dependent rect. 15 16
484 29.21 temperature 10.0 10 > th dose dependent rect. 17 16
501 29.23 radiation 40.0 90 < th dose dependent rect. 17 17
507 29.24 radiation 20.0 30 < th dose dependent sin 22 NA
534 29.26 radiation 1.0 270 > th dose dependent rect. 7 7
579 29.33 wind 1.0 270 > th dose independent rect. 8 18
580 29.33 radiation 10.0 10 < th dose independent rect. 17 21
660 29.40 radiation 40.0 270 < th dose dependent rect. 12 7
730 29.46 wind 5.0 270 < th dose independent rect. 2 5
793 29.51 atmosphere 995.0 270 > th dose dependent rect. 2 5
799 29.52 precipitation 0.1 270 < th dose independent rect. 19 8
803 29.52 precipitation 0.1 270 < th dose dependent rect. 19 8
823 29.55 wind 5.0 270 < th dose independent rect. 1 7
824 29.55 temperature 10.0 270 > th dose independent rect. 19 8
825 29.55 temperature 30.0 270 < th dose independent rect. 19 8
826 29.55 humidity 50.0 270 > th dose independent rect. 19 8
827 29.55 atmosphere 995.0 270 > th dose independent rect. 19 8
829 29.55 radiation 1.0 270 < th dose independent rect. 19 8
836 29.55 atmosphere 1015.0 270 < th dose independent rect. 3 16
840 29.55 radiation 1.0 270 < th dose dependent rect. 19 8
848 29.55 radiation 30.0 10 < th dose dependent rect. 17 23
860 29.57 wind 9.0 270 < th dose independent rect. 19 8
887 29.58 radiation 40.0 10 < th dose dependent rect. 17 17
902 29.60 radiation 10.0 270 > th dose independent sin 3 NA
916 29.61 humidity 50.0 270 > th dose independent rect. 7 7
920 29.61 atmosphere 995.0 270 > th dose independent rect. 15 16
921 29.61 atmosphere 1015.0 270 < th dose independent rect. 15 16
930 29.62 precipitation 0.1 270 < th dose independent rect. 3 16
937 29.62 precipitation 0.1 270 < th dose dependent rect. 3 16